Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00894 ATGGGAAGAAAAGGAGGAAGCTGGTTCTCTTCGGTTAAGAAAGTTTTTAAGTCGTCGTCATCATCTTCTAAAGATACGTCAGTGACCGTCTCCACGCCCGTGCAGCCGGACAAAAAGAAGGAAAACAGAGAGAAATTGGGGCATGAAGCGGCAGAGGAAGTGTCGTTCGAGCATTTTCCTGCAGAGAGTTCACCTGATGATGTAACCAATGAAGAGAGTACGACATCAACGCCTGCAAGGGACGATAGAAGTCACGCCATTGCCGTTGCAGAAGCTACTGCAGCAGCTGCTGAAGCTGCTGTTGTAGCTGCTGAAGCAGCTGCTAGAGTTGTGAGATTGGCTGGTTATGGACGCCAATCTAAAGAAGAAAGAGCAGCAACATTCATTCAATCACACTATAGAGGATACCTAGCTCGACGTGCACTGCGCGCGTTGAAAGGATTAGTGAGGCTACAAGCATTGGTGCGAGGACACAATGTGCGCAAGCAAGCGCAAATGACAATGCGATGTATGCAAGCATTAGTGCGGGTGCAAGCACGAGTGCGAGCACGCCGAATTCAATTGAGTCATGAGAATCTTGAGAAAGCAATGGAGGAAGAGGAAGAATTTTTGAGGCAACAAGAAACTATTACTAAGCCTATGAGTCCTATGAGGAAATCATCAGGCATTAATAATAATAATGGTTGGGATAACAAGCGTTTAAGTGTGAAAAAAGCTAAAGAAAATGATTTGAGAAAACATGAAGCTGCAATGAAGAGGGAAAGAGCTCTTGCATATGCTTTCAATTATCAACAGCAACATCAAAAGCAACATTTACATAGAAATTCAAATGGTGATGATGTTGAGATGGGAGGCTATCATCCAAATGATCAAGAAAAAGCCCAATGGGGTTGGAACTGGTTGGAGCATTGGATGTCATCACAACCCTACAATGTAAGACACTTAGGCCAACGTGAGAGCTCTTACATGACACTTCCTTCAACAACATCAACAACAACAGATAACATGTCTGAAAAAACTGTTGAAATGGACATTGTTGCAACACCAAGTAGAAGCAACTACAATTTGGGCCTAATGGGCCAAGAGTTTCACGATGCAAGCCCAAGTTACAGTAGGCATCAAAGACCACCTAGCCCAGGTAGGCCTAGCTACATGGCTCCAACTAAATCTGCGAAGGCTAAGGTTAGGACTGAAGGCCCATTTAAGCAGAGGTTCCCATCTGGGACTAACTGGAACTCGTCTACTAATAGAGGATCGGTAATCGGACCGGGCTGCGACTCGTCTAGCTCGGGTGGTGGAACGACATCTACTTACCAGTTTCCAAGAAGCCCAGGCCCAAAAGTTAATGGCGTTCGTTCGGAGTCTAGACGGATTGTGGGTGGTAGTCAAGACTACACTGAGGATTGGGCCGTTCCACTTGGAGCTCATGGTTGGGCTTAA 1440 0.4569 MGRKGGSWFSSVKKVFKSSSSSSKDTSVTVSTPVQPDKKKENREKLGHEAAEEVSFEHFPAESSPDDVTNEESTTSTPARDDRSHAIAVAEATAAAAEAAVVAAEAAARVVRLAGYGRQSKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLSHENLEKAMEEEEEFLRQQETITKPMSPMRKSSGINNNNGWDNKRLSVKKAKENDLRKHEAAMKRERALAYAFNYQQQHQKQHLHRNSNGDDVEMGGYHPNDQEKAQWGWNWLEHWMSSQPYNVRHLGQRESSYMTLPSTTSTTTDNMSEKTVEMDIVATPSRSNYNLGLMGQEFHDASPSYSRHQRPPSPGRPSYMAPTKSAKAKVRTEGPFKQRFPSGTNWNSSTNRGSVIGPGCDSSSSGGGTTSTYQFPRSPGPKVNGVRSESRRIVGGSQDYTEDWAVPLGAHGWA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00894 479 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Trre2g00894 479 Coils Coil 190 210 - -
Trre2g00894 479 MobiDBLite consensus disorder prediction 403 443 - -
Trre2g00894 479 Pfam Protein of unknown function (DUF4005) 369 429 IPR025064 -
Trre2g00894 479 Gene3D - 119 173 - -
Trre2g00894 479 MobiDBLite consensus disorder prediction 364 459 - -
Trre2g00894 479 Coils Coil 87 107 - -
Trre2g00894 479 MobiDBLite consensus disorder prediction 36 60 - -
Trre2g00894 479 SMART iq_5 121 143 IPR000048 GO:0005515
Trre2g00894 479 SMART iq_5 144 165 IPR000048 GO:0005515
Trre2g00894 479 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Trre2g00894 479 PANTHER IQ-DOMAIN 5-RELATED 1 413 - -
Trre2g00894 479 MobiDBLite consensus disorder prediction 16 84 - -
Trre2g00894 479 Pfam IQ calmodulin-binding motif 123 143 IPR000048 GO:0005515
Trre2g00894 479 Pfam IQ calmodulin-binding motif 149 164 IPR000048 GO:0005515
Trre2g00894 479 MobiDBLite consensus disorder prediction 16 35 - -
Trre2g00894 479 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00894 Trre-Chr2 7071543 7076253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00894 1 478 IQD Protein Family AT3G49260 49.598 5.79e-106 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00894 - - gmx:100798026 510.76