Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00890 ATGGATTTGGATAGCATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCTCATCCACATCATCATCATCACACTGAGTTTTCTTCTTTGAAACCTCGTAATGGAAATAATAATCATCATGTTGTTGGTTCTACAGCTATTGCTCCTGCAACTAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGTCACACATTATGTTCGACATGTAAAACAAGGGTGCACAATCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAGAAGGTTGCCGAATCACTTGAGTTACCATGCAAGTACTATTCTCTTGGATGTCCAGAAATATTTCCATACTACAGCAAACTTAAGCATGAGATGATATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTCCCTACCTCGTTGCGCATTTGAGGGATGACCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTTTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTGTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAAGCTCGGAACTATACTTACAGCCTCGAGGTTGGAGCAAATGGAAGAAAACTCATTTGGGAGGGAACACCACGGAGTATCCGTGATAGCCACCGTAAAGTTCGAGATAGCCACGACGGTCTCATAATTCAACGAAATATGGCCCTCTTTTTCTCTGGTGGTGATAGGAAGGAACTGAAACTAAGAGTCACAGGAAGAATATGGAAAGAACAACAAAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGCAACTGA 996 0.4257 MDLDSIECVSSSDGMDEDEIQHRILHPHPHHHHHTEFSSLKPRNGNNNHHVVGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEMICNFRPYTCPYAGSECSAVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00890 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 121 IPR013083 -
Trre2g00890 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 120 - -
Trre2g00890 331 ProSiteProfiles Zinc finger SIAH-type profile. 122 182 IPR013010 GO:0008270
Trre2g00890 331 MobiDBLite consensus disorder prediction 29 52 - -
Trre2g00890 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 310 IPR008974 GO:0005515
Trre2g00890 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 316 - -
Trre2g00890 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 178 310 - -
Trre2g00890 331 FunFam E3 ubiquitin-protein ligase SINAT3 121 177 - -
Trre2g00890 331 SUPERFAMILY RING/U-box 61 109 - -
Trre2g00890 331 SUPERFAMILY TRAF domain-like 122 314 - -
Trre2g00890 331 Pfam Seven in absentia protein family 111 310 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre2g00890 331 CDD Sina 183 311 - -
Trre2g00890 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 176 IPR013083 -
Trre2g00890 331 ProSiteProfiles Zinc finger RING-type profile. 69 105 IPR001841 -
Trre2g00890 331 CDD RING-HC_SIAHs 67 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00890 Trre-Chr2 7014917 7018641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00890 53 317 C3H Transcription Factor Family AT2G41980 78.731 8.88e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00890 K04506 - tcc:18605771 643.269