Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00889 ATGGACTTCGATAGACTTGGACCGTCCAATCCAGGTGGTTCATCACGTCGCTCCACCGCACCTCTAACAAACTCCACCACATCAAATTCATCTCAAAAAAATAAAAAGCTCATCATGATTTCAATCCTCGCCGCTGCTTTAATCATCGCCTCCGCCATCTCCGCCGCACTAATCACCGTAGTCCGTTCCCGCGCTTCATCCAACGATCAAAATTCCCCGAACCACCGCGCCAAACCAACTCAAGCAATCTCCCGAACCTGCAGCAAAACAAGATTCCCCACACTTTGCATAAACTCCCTCCTCGATTTCCCTGGCTCCACCGCCGCCAACGAGCAACAACTAGTCCATATCTCATTCAACATGACACATCGTCACATCAGCAAAGCACTCTTCGCATCCTCAGGCCTCTCGTATGCAGTTTCAAACTCACGAGTTCGTGCTGCATACGAGGATTGCCTGGAATTAATGGATGAATCCGTGGACTCAATCAGAATGTCCATGGATTCACTATCCACCATGTCGTCAACTCTATCCCGCGCCGATGAATTATCAACCGTCGCGGGATCAGAGGACGTGATGACATGGCTGAGCGCCGCGTTAACTAACCAAGACACATGTCTAGAAGGATTTGAAGACATTAGCGGCACCGTTAAGGATCAGATGGTTGATAATTTGAAGGATTTATCGGAACTCGTGAGTAATTCTCTCGCGATATTTTCAGGGAGTGGAGATTATGATTTTACTGGTGTTCCGATACAGAATAAGAGACGGTTATTGGGAATTGAGAAAGAAGAAAATGATGATGATGTTGTCGGCGATATCTCGCGAGAATTTCCGAAATGGCTTAAGAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATTCAAGCTGATATTATCGTTTCGAAGAGTGGTAACGGAACGGTGAAGACAATTACTGAAGCGATTAAGAAAGCGCCGGATCATGGTAGCCGTCGGTTCATAATCTATGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTGGGGAAAAAGAAAACAAATATTATGTTTATAGGAGATGGGACGGGCAAAACTGTAATTACAGGACAAAGAAGTGTTGGAGATGGCATGACTACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTCCTGGTTTCATGGCACGTGACATCACATTTGAGAACTATGCTGGACCGGAGAAGCACCAAGCGGTGGCGCTCCGTGTTGGAGCAGATCACGCGGTGGTGTACCGCTGCAATATTATTGGGTACCAAGATGCATGCTATGTGCACTCCAACCGTCAATTCTTCCGCGAATGTAACATTTATGGCACCGTAGATTTTATATTTGGAAATGCTGCGGTTGTTTTTCAAAAATGCAATATTTATGCTCGTAAGCCAATGGCCCAACAAAAGAACACCATCACGGCCCAAAATAGAAAAGACCCAAATCAAAATACGGGTATATCCATTCATGATTGTCGGATCCTACCTGCCCCAGATCTAGCCTCATCAAAGGGTAGCATCGAAACATATTTGGGTCGTCCGTGGAAAATGTATTCTAGGACCGTTTACATGCTGTCCTATATGGGCGGTCATGTGCAACCACGCGGATGGTTAGAATGGAATGGAGACTTTGCTTTAAATACATTGTATTATGGTGAATACATGAATTTTGGGCCGGGTGCAGCTGTCGGACAACGGGTCAAATGGCCTGGATACCGAGTTATTACTTCTACTGTGGAGGCGAATAGATACACCGTGTCTCAATTCATCTCCGGTTCGTCGTGGTTACCATCTACAGGAGTGGCATTTTTGGCCGGGTTATCCACTTGA 1845 0.4596 MDFDRLGPSNPGGSSRRSTAPLTNSTTSNSSQKNKKLIMISILAAALIIASAISAALITVVRSRASSNDQNSPNHRAKPTQAISRTCSKTRFPTLCINSLLDFPGSTAANEQQLVHISFNMTHRHISKALFASSGLSYAVSNSRVRAAYEDCLELMDESVDSIRMSMDSLSTMSSTLSRADELSTVAGSEDVMTWLSAALTNQDTCLEGFEDISGTVKDQMVDNLKDLSELVSNSLAIFSGSGDYDFTGVPIQNKRRLLGIEKEENDDDVVGDISREFPKWLKKRDRRLLSLPVSEIQADIIVSKSGNGTVKTITEAIKKAPDHGSRRFIIYVRAGRYEENNLKVGKKKTNIMFIGDGTGKTVITGQRSVGDGMTTFHTASFAASGPGFMARDITFENYAGPEKHQAVALRVGADHAVVYRCNIIGYQDACYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLASSKGSIETYLGRPWKMYSRTVYMLSYMGGHVQPRGWLEWNGDFALNTLYYGEYMNFGPGAAVGQRVKWPGYRVITSTVEANRYTVSQFISGSSWLPSTGVAFLAGLST 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00889 614 NCBIfam pectinesterase inhibitor domain 56 239 IPR006501 GO:0004857
Trre2g00889 614 SMART PMEI_2 78 238 IPR006501 GO:0004857
Trre2g00889 614 SUPERFAMILY Pectin lyase-like 297 611 IPR011050 -
Trre2g00889 614 CDD PMEI-like_3 87 240 - -
Trre2g00889 614 Pfam Plant invertase/pectin methylesterase inhibitor 82 238 IPR006501 GO:0004857
Trre2g00889 614 Gene3D - 294 612 IPR012334 -
Trre2g00889 614 Pfam Pectinesterase 300 597 IPR000070 GO:0030599|GO:0042545
Trre2g00889 614 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 241 IPR035513 -
Trre2g00889 614 MobiDBLite consensus disorder prediction 11 30 - -
Trre2g00889 614 ProSitePatterns Pectinesterase signature 2. 445 454 IPR033131 -
Trre2g00889 614 PANTHER PECTINESTERASE 48 602 - -
Trre2g00889 614 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 240 IPR035513 -
Trre2g00889 614 FunFam Pectinesterase 294 612 - -
Trre2g00889 614 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00889 Trre-Chr2 7007922 7011499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00889 1 613 Carbohydrate Esterase AT5G53370 62.013 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00889 - - gmx:106796002 923.309