Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g00885 | ATGATAATTAAGAAGAATCTCAAATCGGAAATGCCGAGTCGGAAACGGAGTAGACTCGGTAACTCGGAGGAAGAAGAAGATGAGTCAAAGTTGACTCAGATGAAGAATAAGAACAAGAAGAAGAAAATTAACGGTAATTATCCGTTAAATCTTCTCGCCGGTGCAATTCCGGCTAGTATTAAGGGATTACTCGGTGCAATTCCGGCAACCACCGTTGCATCATCGGAAAATTGCTTTTCCGTATCTAACGGAAAAACTGATATTAAGAACACGGCGACTGGAACACGGCCGCCACTTGTTCGAACGTCGCGCGGCCGGCTTCAAGTGTTGCCGTCGCGGTTTAATGATTCTGTTATTGTGAATTGGAAGAAGGATGCAAGGAATGGTGCTGGTGGTGGTGCCGGTGCCGGCACTGCTGCCACGAGCTTTCGTGAATTTGAATTTGATGAATTCAGTATGAAGAACTGTGGTGGAAAAGGAAAGAATGGTGCAAGTGCAACTTCCGGCCGCCGCGGGTATTCGGTATTGTGTGAGGAAGTGTTGCATAAGAATTTTGGTGCTGCTAACAATAAGGAATTGAGTTTGCGTGAGATTTTTGAAGAAACAAAGTTGAATAATGAAGTTTTGAAGAAGGAAGAGAAGAAGAAGAAGAAGAAAGAAGGGTATTTTGGGCCAGAAGATTTTTATGCAGGTGAAATAGTGTGGGCTAAAGCTAATAAAAAGGAACCATTTTGGCCTGCATTTGTTCTTGATCCAATGTCTCAAGCACCTGAGCTTGTTTTAAGATCATGTATAGCTGATGCTACTTGTGTCATGTTTCTTGGATACTCTAAGAATGAAAATCACAGGGATTTTGCATGGGTGAAGTGTGGAATGATTTTTCCATTTATGGATAATGTAGACAGGTTTCAAGAGCAGTCTGAATTGAGTTACTGTGATTCGTCGCAATTTCATGCGGCAATTGAGGAAGCGTTTTTGGCTGATCAGGGGATTGTGGAGAATATTATAGAAGATATAAATGCGGTGGCTGGTAATAATGGTTGCAGTAATGATTCTATTCTTAAAGAGTTTCAGAGTGTCAGTGCTTCAAAACGGAATGCGGATGGTCTTGTTCAGAAGGATTCATTTAACAGAAAGAAAAACATGCGACTTTGTGATGAATGTGGATTGGACCTTCCTTTCAATATGTCAAAGAAAACAAAGGATTTGACTCCCGGTGGTCAACTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCTAGCATCCTTTTCAAGAATCTTGGAAGCACTGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCTGATTCAGAAAAATCATATCCAAAAGTCAAATGGAACAAAAACAATGGGCAGGTAGAACTTCCAAAGAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCATTTAGTAATGTGCAAGTGTGGTTTTTGTGACACTGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAAAACAAGTATTCAAGTTAAAGGATCCATGCTATCACTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTATAGTTTCTGCCAAACCTAAAAGACCATCCTCGAAAGCAAGAAAGCAGAAATTGCTTACCTTTCTACAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTATATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATAATCTGTGTCAGATGTCAAATAGCCGTTCATCAAGAATGCTATGGAGCAAGACATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACGCGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATCGATCCATTATGGGTTCATGTGACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGTTCGTGCACACAATGTGTCAAGTGTTCCACATTTTTCCATGTCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCAGAGAAAAATGGTAAACAGACAACAAGAATGGTTTGTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACCCCTAATGGGGTGATTTCAACTAAAATCCTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCATCGAACAGAATAAAGGTAGAAGAAACTCCTCCAGTAGATAACACCGAACATGATCCATTTTCTGCTGCTAGGTGCCGAGTCTTTGTAAGAACAAACCACACAAAAAAGAGGGCAGCTGATGAAGCCATTCCTCATAAAGTGAGGGGTCACTGCCATCATTCTTTAGATGAAATACAGAGATTAAATGCATGCAAAGTGGTAGATGAGTCTCGGACATTTTCATCTTTTAGGGAGCGCCTTCATCACTTACAGAGAACCGAAAATGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGTCTATTTGCACGAAAAAATATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTAAGGCGCAGCGTTGCAGATCTACGGGAGGCACGTTATAAATTAGAAAGGAAAGACTGCTACCTGTTCAAAATAAGTGAAGAAGTGGTGGTTGATGCAACTGATAAAGGAAATATTGCACGACTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGAGTGTGGGTCATGACGAGAGCCGGATCGCACTCATTGCGAAGACTAATGTTTCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCTTGTTTATGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG | 3153 | 0.4069 | MIIKKNLKSEMPSRKRSRLGNSEEEEDESKLTQMKNKNKKKKINGNYPLNLLAGAIPASIKGLLGAIPATTVASSENCFSVSNGKTDIKNTATGTRPPLVRTSRGRLQVLPSRFNDSVIVNWKKDARNGAGGGAGAGTAATSFREFEFDEFSMKNCGGKGKNGASATSGRRGYSVLCEEVLHKNFGAANNKELSLREIFEETKLNNEVLKKEEKKKKKKEGYFGPEDFYAGEIVWAKANKKEPFWPAFVLDPMSQAPELVLRSCIADATCVMFLGYSKNENHRDFAWVKCGMIFPFMDNVDRFQEQSELSYCDSSQFHAAIEEAFLADQGIVENIIEDINAVAGNNGCSNDSILKEFQSVSASKRNADGLVQKDSFNRKKNMRLCDECGLDLPFNMSKKTKDLTPGGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSYPKVKWNKNNGQVELPKKVTVLCNGVEGIYFPSLHLVMCKCGFCDTEKQALSEWERHTGSKFRNWKTSIQVKGSMLSLEQWMLQLAEFHAKAIVSAKPKRPSSKARKQKLLTFLQDKYEPVCAKWTTERCAICRWVEDWDYNKIIICVRCQIAVHQECYGARHVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCVKCSTFFHVMCASRAGYRMELHCSEKNGKQTTRMVCYCAYHRAPNPDTVLIIQTPNGVISTKILIQNKRKVGSRLISSNRIKVEETPPVDNTEHDPFSAARCRVFVRTNHTKKRAADEAIPHKVRGHCHHSLDEIQRLNACKVVDESRTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARKNIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN | 1050 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g00885 | 1050 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 669 | 784 | IPR034732 | - | |
Trre2g00885 | 1050 | FunFam | Histone-lysine N-methyltransferase | 882 | 1050 | - | - | |
Trre2g00885 | 1050 | Gene3D | - | 225 | 330 | - | - | |
Trre2g00885 | 1050 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Trre2g00885 | 1050 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 667 | 785 | IPR013083 | - | |
Trre2g00885 | 1050 | PANTHER | PHD FINGER PROTEINS | 27 | 511 | - | - | |
Trre2g00885 | 1050 | Pfam | PHD-finger | 423 | 476 | IPR019787 | - | |
Trre2g00885 | 1050 | ProSitePatterns | Zinc finger PHD-type signature. | 618 | 663 | IPR019786 | - | |
Trre2g00885 | 1050 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Trre2g00885 | 1050 | Pfam | SET domain | 919 | 1024 | IPR001214 | GO:0005515 | |
Trre2g00885 | 1050 | SUPERFAMILY | SET domain | 900 | 1047 | IPR046341 | - | |
Trre2g00885 | 1050 | CDD | ePHD_ATX3_4_5_like | 672 | 783 | IPR041955 | - | |
Trre2g00885 | 1050 | CDD | PHD_TCF19_like | 424 | 474 | - | - | |
Trre2g00885 | 1050 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 610 | 666 | IPR013083 | - | |
Trre2g00885 | 1050 | SUPERFAMILY | Tudor/PWWP/MBT | 222 | 327 | - | - | |
Trre2g00885 | 1050 | ProSiteProfiles | Zinc finger PHD-type profile. | 421 | 477 | IPR019787 | - | |
Trre2g00885 | 1050 | CDD | PWWP_AtATX3-like | 229 | 330 | - | - | |
Trre2g00885 | 1050 | SMART | set_7 | 908 | 1031 | IPR001214 | GO:0005515 | |
Trre2g00885 | 1050 | SUPERFAMILY | FYVE/PHD zinc finger | 422 | 479 | IPR011011 | - | |
Trre2g00885 | 1050 | CDD | SET_SETD1-like | 895 | 1046 | - | - | |
Trre2g00885 | 1050 | SUPERFAMILY | FYVE/PHD zinc finger | 616 | 680 | IPR011011 | - | |
Trre2g00885 | 1050 | SMART | PostSET_3 | 1034 | 1050 | IPR003616 | - | |
Trre2g00885 | 1050 | ProSiteProfiles | PWWP domain profile. | 230 | 299 | IPR000313 | - | |
Trre2g00885 | 1050 | ProSiteProfiles | Post-SET domain profile. | 1034 | 1050 | IPR003616 | - | |
Trre2g00885 | 1050 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 1050 | IPR025780 | - | |
Trre2g00885 | 1050 | Pfam | PHD-finger | 630 | 664 | - | - | |
Trre2g00885 | 1050 | Pfam | PHD-zinc-finger like domain | 671 | 783 | - | - | |
Trre2g00885 | 1050 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 418 | 478 | IPR013083 | - | |
Trre2g00885 | 1050 | SMART | PHD_3 | 617 | 664 | IPR001965 | - | |
Trre2g00885 | 1050 | SMART | PHD_3 | 728 | 784 | IPR001965 | - | |
Trre2g00885 | 1050 | SMART | PHD_3 | 423 | 475 | IPR001965 | - | |
Trre2g00885 | 1050 | Gene3D | SET domain | 806 | 1050 | IPR046341 | - | |
Trre2g00885 | 1050 | ProSiteProfiles | SET domain profile. | 908 | 1025 | IPR001214 | GO:0005515 | |
Trre2g00885 | 1050 | FunFam | Histone-lysine N-methyltransferase | 667 | 786 | - | - | |
Trre2g00885 | 1050 | Pfam | PWWP domain | 231 | 324 | IPR000313 | - | |
Trre2g00885 | 1050 | CDD | PHD_ATX3_4_5_like | 617 | 663 | IPR042011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g00885 | Trre-Chr2 | 6931728 | 6941530 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g00885 | 618 | 783 | C2H2 Transcription Factor Family | AT3G14740 | 34.286 | 1.42e-19 | 89.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Trre2g00885 | zf-HC5HC2H_2 | 4.3e-27 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g00885 | - | - | gmx:100775276 | 1541.55 |