Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00859 ATGCAAAAGGACAAAGAAGTTGTTAGCAAGGAAGGGAAAGAAATGGAAACCGAAGGAACTCGTGCGAAAGAAGAAACCCTACCTCCCGGATTTCGATTTCATCCAACCGATGAAGAACTTATTACTTACTATCTTGTAAACAAGATTTCAGATTCCGATAATTTTACTTGCAAAGCAATAGGTGATGTAGATCTCAACAAGTGCGAGCCATGGGAGCTTCCGGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTTTTCAGCCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACAAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATATTCAATAGTGTTACATCTGAATTGGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGTAGAGCTCCTAGAGGAGAAAAATCCAACTGGGTCATGCATGAATACCGTATTCATTCAAAATCAAGCATCAGAACCAACAAGCAAGATGAATGGGTGGTAAGCAGGGTATTCCGGAAAAGTGCAGGTGCAAAGAAGTACCCTTCAACAAACCCTACAAGATCAGTCATGATGAATCCTTACAATATTAATCTAGAAGTTTCTCCTCCTAATTTCAATAATAATAATATGGCACCACCACAAATGATGCAGTTAGGACTTGATTCTGCAACTCATTTCCAGCTCTATGGAAGAAACTACATCAACACTGCAGAAGTTCTAAGAGCTGGTGGTATACCAATGCAGCAATATTCCAATTTGAATTTTCCAGTATCATCATCATCATCTTTAGGAGTTGGAGATGTTGGAGGATTCACTATTTCAGGGCTTAATTTGAATCTTGGTGGATCAACTTCTTCACAACCTATTTTGAGGCCAATGCCATCAACTGTGCATAATAATATGCATGATTTCAGTTCCAACATGATGATGACAGGTGCAAATAGTAATATTCAGCTTGCTACAGAGAATAATAATAATAATCATAATGAAGGGTATGGTGGAGGAGATCAAGTGAATAATGCAAACCCTAATAGGTACAATATGCAAGGTACTATGGATCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTATTGA 1113 0.3845 MQKDKEVVSKEGKEMETEGTRAKEETLPPGFRFHPTDEELITYYLVNKISDSDNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSTNPTRSVMMNPYNINLEVSPPNFNNNNMAPPQMMQLGLDSATHFQLYGRNYINTAEVLRAGGIPMQQYSNLNFPVSSSSSLGVGDVGGFTISGLNLNLGGSTSSQPILRPMPSTVHNNMHDFSSNMMMTGANSNIQLATENNNNNHNEGYGGGDQVNNANPNRYNMQGTMDHCVDLDHYWPPSY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00859 370 MobiDBLite consensus disorder prediction 1 31 - -
Trre2g00859 370 ProSiteProfiles NAC domain profile. 27 177 IPR003441 GO:0003677|GO:0006355
Trre2g00859 370 FunFam NAC domain-containing protein 100-like 36 181 - -
Trre2g00859 370 SUPERFAMILY NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Trre2g00859 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 299 - -
Trre2g00859 370 Pfam No apical meristem (NAM) protein 28 155 IPR003441 GO:0003677|GO:0006355
Trre2g00859 370 Gene3D NAC domain 36 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00859 Trre-Chr2 6719523 6722083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00859 21 367 NAC Transcription Factor Family AT2G24430 50.852 1.18e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g00859 NAM 4.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00859 - - lja:Lj1g3v2035130.1 450.669