Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00858 ATGCCTCGTGGAACACTTGAAGTTGTTCTCATCGGAGCCAAAGGCCTTCGTGACAGTGATTTTTTCAAGAAAATGGACCCCTATGCGATCCTCACATATCGGACTCAAGAGCACAAAAGCAGTGTAGCCAAGAATGCTGGATCTAATCCACGTTGGAATGAAAGTTTTCTCTTCACAGTTTGTGACAATGTTGCTGAGCTTAATTTGAGGCTAATGGATGAAGATACATTTACCAAGGATGACTTCCTTGGTGAGGCAAAAATTCATTTGGGACCGGTTCTTGAGTATGGGAGTGTTCCAGAAACTGCTTATAATGTTGTCAAGCAGCAGAATTACTGTGGAGAGGTTCATGTGGCTCTCACTTTTCATCCTGAGGTAATTTTGTTTAAGAATGTTTTATGA 402 0.4154 MPRGTLEVVLIGAKGLRDSDFFKKMDPYAILTYRTQEHKSSVAKNAGSNPRWNESFLFTVCDNVAELNLRLMDEDTFTKDDFLGEAKIHLGPVLEYGSVPETAYNVVKQQNYCGEVHVALTFHPEVILFKNVL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00858 133 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Trre2g00858 133 SMART C2_3c 5 102 IPR000008 -
Trre2g00858 133 Pfam C2 domain 4 104 IPR000008 -
Trre2g00858 133 PANTHER C2 DOMAIN-CONTAINING 1 123 - -
Trre2g00858 133 Gene3D C2 domain 2 125 IPR035892 -
Trre2g00858 133 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00858 Trre-Chr2 6711411 6714028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00858 4 94 C2H2 Transcription Factor Family AT4G21160 35.165 6.19e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00858 - - gmx:100814819 199.134