Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00857 ATGGAACATGACAAAGATTTGAATTTGACTTTGGAGTTAAGTTCATCAGAATTTGCAACCAATGATTTAGAAACTCACAAACTTGCTCCTTCTATTCAACGAAGGGTATCTGGTCCTACTAGAAGATCAACCAAAGGAGGCTGGACAGATAAGGAGGATAAACTTTTGATTGCTGCTGTGAAAAAATATAATGGAAAAAGTTGGAAAAAGATTGCTGCATCTATTCCTGATAGAACAGATGTTCAATGCTTGCATCGTTGGCAAAAGGTTCTTAATCCTGATCTTATCAAAGGACCTTGGACAGAACAGGAAGATAAACTACTAAGTGAGCTTGTCATATTACATGGGAAAAAGAATTGGTCTCAGGTAGCAAAATCCTTGCCTGGTCGCATAGGTAAACAATGTAGAGAAAGGTGGTATAACCATTTAAATCCAGATATAATAAAAACTGCATGGACCAAAGAAGAGGAGTTGACTCTTATGAAGTCTCACAAAGTATATGGGAATAGTTGGGCTGAAATAGCCAAGTTTCTGCCTGGAAGGAGTGAAAACTCTATCAAGAATCATTGGAACTGTTCTTTGAAGAAAAAGAATATTGATTTAAATACCTCAATATACACCTCCAAATACAATGAAGCACAATCTTTGGATTCTAAAATTGATTATGATACATCAACCCCAAATGAAACAAGCATGGAATCTTGTGAAGGTCACTACAAGCACCTTAAGCTAGATGATGTGGAGAATGATCATTTGGCAACACCTAACAACACTAACATTCATATAGAATATACTTCAATTACTAATTCAGTTTGTAATAATCCATCAAATTCTATAGAAGAACTTGATACTAGTAGTCCAAGCCTTAAAGAAATATTAAGTGCTTTAAGGACTTCTGCAAAGAAATGTAAATACATTCCATCTATTATGACACGGACATTCAGATGA 948 0.3513 MEHDKDLNLTLELSSSEFATNDLETHKLAPSIQRRVSGPTRRSTKGGWTDKEDKLLIAAVKKYNGKSWKKIAASIPDRTDVQCLHRWQKVLNPDLIKGPWTEQEDKLLSELVILHGKKNWSQVAKSLPGRIGKQCRERWYNHLNPDIIKTAWTKEEELTLMKSHKVYGNSWAEIAKFLPGRSENSIKNHWNCSLKKKNIDLNTSIYTSKYNEAQSLDSKIDYDTSTPNETSMESCEGHYKHLKLDDVENDHLATPNNTNIHIEYTSITNSVCNNPSNSIEELDTSSPSLKEILSALRTSAKKCKYIPSIMTRTFR 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00857 315 CDD SANT 99 143 IPR001005 -
Trre2g00857 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 91 IPR017930 -
Trre2g00857 315 Gene3D - 151 197 - -
Trre2g00857 315 FunFam Transcriptional activator Myb isoform A 44 96 - -
Trre2g00857 315 Pfam Myb-like DNA-binding domain 150 191 IPR001005 -
Trre2g00857 315 Pfam Myb-like DNA-binding domain 45 91 IPR001005 -
Trre2g00857 315 Pfam Myb-like DNA-binding domain 97 143 IPR001005 -
Trre2g00857 315 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Trre2g00857 315 SUPERFAMILY Homeodomain-like 94 190 IPR009057 -
Trre2g00857 315 SUPERFAMILY Homeodomain-like 43 100 IPR009057 -
Trre2g00857 315 CDD SANT 48 91 IPR001005 -
Trre2g00857 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 147 IPR017930 -
Trre2g00857 315 Gene3D - 44 94 - -
Trre2g00857 315 PANTHER MYB PROTEIN-RELATED 45 130 - -
Trre2g00857 315 ProSiteProfiles Myb-like domain profile. 92 143 IPR001005 -
Trre2g00857 315 CDD SANT 151 191 IPR001005 -
Trre2g00857 315 ProSiteProfiles Myb-like domain profile. 40 91 IPR001005 -
Trre2g00857 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 198 IPR017930 -
Trre2g00857 315 Gene3D - 96 148 - -
Trre2g00857 315 FunFam Transcriptional activator Myb isoform A 97 148 - -
Trre2g00857 315 SMART sant 44 93 IPR001005 -
Trre2g00857 315 SMART sant 148 196 IPR001005 -
Trre2g00857 315 SMART sant 96 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00857 Trre-Chr2 6700173 6703596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00857 32 197 MYB Transcription Factor Family AT5G02320 69.277 3.31e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g00857 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00857 - - cam:101493427 340.887