Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00839 ATGGGACTAAGTGGAAAAATTGATGTAGACACATTATTGGAATTACCAACTTTGGTTACTTTTAGTGTTAATAACAACTTATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAATTAAGGGGATTATATTTGTCTAATAATAAATTTTCAGGTGAAATTTTAGATGATAGTTTTGAAGGTATGGGAAATCTTAAAAGTGTATTTTTGGCTGGAAATGAGTTCAATGGTCATATTCCTATTTCACTTGCTCAATTGCCTAATCTTTTGGATTTGGATTTGCATGGGAATAGTTTTGGAGGTAACATACCTGAATTTCAAAAAAATGGTTTTAGAGCATTTAATTTATCTAATAACCAATTGGAGGGTCCAATACCACAAAGCTTAAGCAATGAGCCTTTAACATCATTTTCTGCCAACAAAGGCCTATGTGGGAAACCTTTGAGCAATCCATGCAACACTTCTCCAACCAAATCTAATGTGAATTCTAATTCATCTCCTTCAACTCAAGGAAAGGGAAAAAAGCACAAAAAATTACTTATAGTGTTGATTGCAGTGTTGGCTATGGTTATTTTAGCTTCAATGTTTGCACTTTTGTTTATCCAAAGCCGCCGGCGACGTCGGCGAAGTTTAGAACAAAGCCAACCCATATTAGGCCTACAATTGAATTCTCAAAAGACTACTCCAAGTGTCATAGAGACAAAATCCATTGATTTGGCTGGTGATTTTAGTAAAGGTGAAAATGGAGAATTGAATTTTGTTAGGGAAGACAAAGGTGGTTTTGATTTACAAGACTTGCTTAGGTCATCAGCTGAAGTGCTTGGAAGTGGAAGTTTTGGATCAACTTATAAGGCTATGGTTTTGAATGGACCAATTGTGGTTGTGAAGAGATTTAGGCAAATGAACAATGTTGGGAAACAAGAGTTTTTTGAACACATGAAAAAGCTTGGAAGTTTGAATCATCCTAATCTACTCCCTCTTGTTGCATTCTATTACAAAAAAGAAGAGAAGTTTTTGGTTTATGATTTTGGTGAAAATGGTAGCTTGGCTAGTCATCTACATGGTAGAAATGGCATTGTACTAAATTGGTCAACTCGTCTAAAAATCATAAAAGGAGTAGCAAGAGGCTTAGCACATCTCTACAAAGAGTTCCCTAACCAAAACCTACCACATGGTCATCTAAAATCATCCAATGTAATGCTAAACAATTCATTTGAGCCACTTTTAACAGAGTATGGACTTGTACCTATTACAAACAAAAACCATGCACAACAATTCATGTCATCCTATAAATCACCAGAAGTCACACACTTTGATAGACCAAATGAAAAAACAGACATTTGGTGTCTTGGAATACTTATTTTAGAATTATTAACAGGAAAATTTCCAGCAAATTATTTGAGACATGGAAAAGGCGAAAATTCCGATTTAGCAACATGGGTTAATTCAGTTGTTAGAGAAGAATGGACAGGTGAAGTGTTTGATAAAGATATAATGGGAACAAGAAATGGTGAAGGTGAGATGTTGAAGCTTTTGAGGATTGGAATGTATTGTTGTGAATGGAGTGTTGAGAGAAGATTGGATATAAGAGATGCTTTGGCTAAGATTGAAGAACTTAAAGAGAAAGATAGTGAAGATGAATCTTTTTCTTATGTTAGTGATGGTGATTTTTATTCAAGAGGTGTCACTGATGATGAATTTTCATTTTCTATTACTGATCATTCACAAGTTGATAAGTTTGGAAATGTTCCATTGTAA 1761 0.3453 MGLSGKIDVDTLLELPTLVTFSVNNNLFEGPMPEFKKLVKLRGLYLSNNKFSGEILDDSFEGMGNLKSVFLAGNEFNGHIPISLAQLPNLLDLDLHGNSFGGNIPEFQKNGFRAFNLSNNQLEGPIPQSLSNEPLTSFSANKGLCGKPLSNPCNTSPTKSNVNSNSSPSTQGKGKKHKKLLIVLIAVLAMVILASMFALLFIQSRRRRRRSLEQSQPILGLQLNSQKTTPSVIETKSIDLAGDFSKGENGELNFVREDKGGFDLQDLLRSSAEVLGSGSFGSTYKAMVLNGPIVVVKRFRQMNNVGKQEFFEHMKKLGSLNHPNLLPLVAFYYKKEEKFLVYDFGENGSLASHLHGRNGIVLNWSTRLKIIKGVARGLAHLYKEFPNQNLPHGHLKSSNVMLNNSFEPLLTEYGLVPITNKNHAQQFMSSYKSPEVTHFDRPNEKTDIWCLGILILELLTGKFPANYLRHGKGENSDLATWVNSVVREEWTGEVFDKDIMGTRNGEGEMLKLLRIGMYCCEWSVERRLDIRDALAKIEELKEKDSEDESFSYVSDGDFYSRGVTDDEFSFSITDHSQVDKFGNVPL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00839 586 Pfam Protein kinase domain 272 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00839 586 Gene3D Transferase(Phosphotransferase) domain 1 346 559 - -
Trre2g00839 586 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Trre2g00839 586 Pfam Leucine rich repeat 41 99 IPR001611 GO:0005515
Trre2g00839 586 MobiDBLite consensus disorder prediction 149 173 - -
Trre2g00839 586 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Trre2g00839 586 SUPERFAMILY Protein kinase-like (PK-like) 272 541 IPR011009 -
Trre2g00839 586 ProSiteProfiles Protein kinase domain profile. 269 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00839 586 FunFam pollen receptor-like kinase 1 240 344 - -
Trre2g00839 586 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 546 IPR046959 -
Trre2g00839 586 FunFam Pollen receptor-like kinase 1 346 551 - -
Trre2g00839 586 MobiDBLite consensus disorder prediction 149 171 - -
Trre2g00839 586 SUPERFAMILY L domain-like 10 133 - -
Trre2g00839 586 Gene3D Phosphorylase Kinase; domain 1 243 344 - -
Trre2g00839 586 Gene3D Ribonuclease Inhibitor 112 156 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00839 Trre-Chr2 6583769 6586499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00839 3 571 Receptor kinase-like Gene Family AT5G35390 47.789 8.54e-180 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre2g00839 Pkinase 9.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00839 - - tpra:123893577 1051.58