Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00838 ATGGCTCATAAAAGAACATTCTATTGCATATTCATACACTTTATATTGTTTTCCATTTATTTTGTGCCAACTTTTGGTGACACAAATGGTCAAATTTTGATAAGGTTCAAAAGTTTTTTGTCCAATGACAATGCTTTAGAAAATTGGGTTGATGAGTCTAATTTGTGCAAATGGGCAGGTTTATTATGCAAAAACAACAACACATTATTTTATGGCTTGAGATTAGAAAATATGGGACTAAGTGGAAAAATTGATGTAGACACATTATTGGAATTACCAACTTTGGTTACTTTTAGTGTTAATAACAACTTATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAATTAAGGGGATTATATTTGTCTAATAATAAATTTTCAGGTGAAATTTTAGATGATAGTTTTGAAGGTATGGGAAATCTTAAAAGTGTATTTTTGGCTGGAAATGAGTTCAATGGTCATATTCCTATTTCACTTGCTCAATTGCCTAATCTTTTGGATTTGGATTTGCATGGGAATAGTTTTGGAGGTAACATACCTGAATTTCAAAAAAATGGTTTTAGAGCATTTAATTTATCTAATAACCAATTGGAGGGTCCAATACCACAAAGCTTAAGCAATGAGCCTTTAACATCATTTTCTGCCAACAAAGGCCTATGTGGGAAACCTTTGAGCAATCCATGCAACACTTCTCCAACCAAATCTAATGTGAATTCTAATTCATCTCCTTCAACTCAAGGAAAGGGAAAAAAGCACAAAAAATTACTTATAGTGTTGATTGCAGTGTTGGCTATGGTTATTTTAGCTTCAATGTTTGCACTTTTGTTTATCCAAAGCCGCCGGCGACGTCGGCGAAGTTTAGAACAAAGCCAACCCATATTAGGCCTACAATTGAATTCTCAAAAGACTACTCCAAGTGTCATAGAGACAAAATCCATTGATTTGGCTGGTGATTTTAGTAAAGGTGAAAATGGAGAATTGAATTTTGTTAGGGAAGACAAAGGTGGTTTTGATTTACAAGACTTGCTTAGGTCATCAGCTGAAGTGCTTGGAAGTGGAAGTTTTGGATCAACTTATAAGGCTATGGTTTTGAATGGACCAATTGTGGTTGTGAAGAGATTTAGGCAAATGAACAATGTTGGGAAACAAGAGTTTTTTGAACACATGAAAAAGCTTGGAAGTTTGAATCATCCTAATCTACTCCCTCTTGTTGCATTCTATTACAAAAAAGAAGAGAAGTTTTTGGTTTATGATTTTGGTGAAAATGGTAGCTTGGCTAGTCATCTACATGGTAGAAATGGCATTGTACTAAATTGGTCAACTCGTCTAAAAATCATAAAAGGAGTAGCAAGAGGCTTAGCACATCTCTACAAAGAGTTCCCTAACCAAAACCTACCACATGGTCATCTAAAATCATCCAATGTAATGCTAAACAATTCATTTGAGCCACTTTTAACAGAGTATGGACTTGTACCTATTACAAACAAAAACCATGCACAACAATTCATGTCATCCTATAAATCACCAGAAGTCACACACTTTGATAGACCAAATGAAAAAACAGACATTTGGTGTCTTGGAATACTTATTTTAGAATTATTAACAGGAAAATTTCCAGCAAATTATTTGAGACATGGAAAAGGCGAAAATTCCGATTTAGCAACATGGGTTAATTCAGTTGTTAGAGAAGAATGGACAGGTGAAGTGTTTGATAAAGATATAATGGGAACAAGAAATGGTGAAGGTGAGATGTTGAAGCTTTTGAGGATTGGAATGTATTGTTGTGAATGGAGTGTTGAGAGAAGATTGGATATAAGAGATGCTTTGGCTAAGATTGAAGAACTTAAAGAGAAAGATAGTGAAGATGAATCTTTTTCTTATGTTAGTGATGGTGATTTTTATTCAAGAGGTGTCACTGATGATGAATTTTCATTTTCTATTACTGATCATTCACAAGTTGATAAGTTTGGAAATGTTCCATTGTAA 1992 0.3399 MAHKRTFYCIFIHFILFSIYFVPTFGDTNGQILIRFKSFLSNDNALENWVDESNLCKWAGLLCKNNNTLFYGLRLENMGLSGKIDVDTLLELPTLVTFSVNNNLFEGPMPEFKKLVKLRGLYLSNNKFSGEILDDSFEGMGNLKSVFLAGNEFNGHIPISLAQLPNLLDLDLHGNSFGGNIPEFQKNGFRAFNLSNNQLEGPIPQSLSNEPLTSFSANKGLCGKPLSNPCNTSPTKSNVNSNSSPSTQGKGKKHKKLLIVLIAVLAMVILASMFALLFIQSRRRRRRSLEQSQPILGLQLNSQKTTPSVIETKSIDLAGDFSKGENGELNFVREDKGGFDLQDLLRSSAEVLGSGSFGSTYKAMVLNGPIVVVKRFRQMNNVGKQEFFEHMKKLGSLNHPNLLPLVAFYYKKEEKFLVYDFGENGSLASHLHGRNGIVLNWSTRLKIIKGVARGLAHLYKEFPNQNLPHGHLKSSNVMLNNSFEPLLTEYGLVPITNKNHAQQFMSSYKSPEVTHFDRPNEKTDIWCLGILILELLTGKFPANYLRHGKGENSDLATWVNSVVREEWTGEVFDKDIMGTRNGEGEMLKLLRIGMYCCEWSVERRLDIRDALAKIEELKEKDSEDESFSYVSDGDFYSRGVTDDEFSFSITDHSQVDKFGNVPL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00838 663 Pfam Leucine rich repeat N-terminal domain 30 63 IPR013210 -
Trre2g00838 663 FunFam pollen receptor-like kinase 1 317 421 - -
Trre2g00838 663 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Trre2g00838 663 MobiDBLite consensus disorder prediction 226 248 - -
Trre2g00838 663 Gene3D Phosphorylase Kinase; domain 1 320 421 - -
Trre2g00838 663 SUPERFAMILY L domain-like 49 215 - -
Trre2g00838 663 Pfam Protein kinase domain 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00838 663 ProSiteProfiles Protein kinase domain profile. 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00838 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 623 IPR046959 -
Trre2g00838 663 Gene3D Ribonuclease Inhibitor 138 233 IPR032675 -
Trre2g00838 663 Gene3D Transferase(Phosphotransferase) domain 1 423 636 - -
Trre2g00838 663 MobiDBLite consensus disorder prediction 226 250 - -
Trre2g00838 663 SUPERFAMILY Protein kinase-like (PK-like) 349 618 IPR011009 -
Trre2g00838 663 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Trre2g00838 663 FunFam Pollen receptor-like kinase 1 423 628 - -
Trre2g00838 663 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00838 Trre-Chr2 6583769 6586730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00838 2 648 Receptor kinase-like Gene Family AT5G35390 45.441 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre2g00838 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00838 - - tpra:123893577 1198.34