Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00833 ATGTCTCGTGTGTATGTGGGTAATCTGGATTCGAGAGTTACGGAGAGGGACCTTGAAGATGAATTCCGTATTTTTGGTGTTATTCGAAGTGTTTGGGTTGCTCGGAGACCGCCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCGCAGGATGCTATTCGCGAATTAGATGGTAAGAATAATTGGAGGGTGGAGCTCTCTCACAATTCTAGAAGCGGTGGTGGTGGTGGTGGAGGAGGAGGCGGCGGTCGTGGTCGCGGAGGTGGTGGCGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGGAAGACGCCGTAGCCGTAGTCCACCTAGATTTCGTAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCTCCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCCGGTCACCACCTCCTTACCGTGGGCGCGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCAGAAGCAGAAGTTGA 570 0.5368 MSRVYVGNLDSRVTERDLEDEFRIFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNNWRVELSHNSRSGGGGGGGGGGGRGRGGGGGGSDLKCYECGEPGHFARECRNRGGGGGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00833 189 CDD RRM_SRSF3_like 3 71 - -
Trre2g00833 189 MobiDBLite consensus disorder prediction 103 118 - -
Trre2g00833 189 SUPERFAMILY Retrovirus zinc finger-like domains 90 116 IPR036875 GO:0003676|GO:0008270
Trre2g00833 189 Gene3D - 99 152 - -
Trre2g00833 189 MobiDBLite consensus disorder prediction 66 189 - -
Trre2g00833 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Trre2g00833 189 Gene3D - 1 98 IPR012677 -
Trre2g00833 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 71 IPR000504 GO:0003723
Trre2g00833 189 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Trre2g00833 189 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Trre2g00833 189 FunFam serine/arginine-rich splicing factor RSZ22-like 1 97 - -
Trre2g00833 189 SUPERFAMILY RNA-binding domain, RBD 3 94 IPR035979 GO:0003676
Trre2g00833 189 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 167 - -
Trre2g00833 189 FunFam Serine/arginine-rich splicing factor RSZ22A 95 156 - -
Trre2g00833 189 SMART rrm1_1 3 69 IPR000504 GO:0003723
Trre2g00833 189 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00833 Trre-Chr2 6552810 6555473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00833 2 59 Eukaryotic Initiation Factors Gene Family AT4G34110 38.095 6.29e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00833 K12896 - sspl:121745482 226.483