Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00822 ATGATGGATGGAAATCCTAGTAAAAAAGGCACTGATGGGATGGTAGCCCCTAGAAAAAGGATCAGCGTTGTGTTTAGAGACACTGCTAATACCAGAAATCGAAATGATCAAATTTGCAGCCGAGTGGGTTGCAGTAGTACAGCCAACCCTCCTAAAGTTGCTCAAGTCAGATCTTCCGAAAAAGTTAAATCTTCAAGGCCATCAATGCAGTCAACTTCAAGTGGCAAGGAGGTAATCGGTAGTTCCCGTAGAACAGCTACTAACCCAGCAAAACCATTTATAAAGCCTCGGAGAACATTACCTTCAAGTGGGCTTCAAGCTGACGAGGAAGGTAAAAAGTCTACTAAGGTAATTTTGACGGAAGTAGGAAAATCTAGTGGAGTGTCAAAATTACGATCTCAAGGGAATTTTAATCAAAGACCTGGATTTCGTCAACAAGAAAATGAAAGCATTCGTCAGGTGAAACAAGCCGTTTCTAGCAGCAAGTATGGATTGAGGAACCTCAGATGCAATAATATATCTGATATCATCCCTTCTTCTTGCTCATCATCAGATTCTACCCTTAATAGAAAGAAGACTGTGATTAAAAAGGGAAACACTGGAGGGGAAAGTAGCTCAACTGTGAAAGGGAAGAAGATGACCGGTTCTTCACCGGAAGGATTGAATTCTGGCTCCAGAAGTGGAATATCTATATCTGAAGCAAGAGGATCTAGAAGTATTCCTCCTTCTCGTAGGGACAATAGCAGAGCAACTGTTAGACCTGAAAGATCGGTTAGTCGTTATGCCAGCGGAAGATTTTCTAGCCAAGGAAATAAAAACCCCACGGAAACAAATGAGCCGTCTGTTGAGTTACCTAGTTCGCCTCATTGTCTTGATCTTAATTCTCCTGTCATTGAAGAGTTACGTGATATTATGCCTATGTCTCCTGAAGAATATGACATCCCTCATTCTGTAATAAATCAGAATGGATTTCGGCGTTACGACATGGAGAATATTTCCGAGGTATTATTGGCACTTGAGAGAATTGAGCAAAATGAAGAGTTAACCCAAGAGCAAATTCGTTTACTAGAGACCAACTCGTTTCTTAACGGGCTTGACTTATATGATCGTCATAGAGACTTGCGATTGGATATTGATGACATGTCATATGAGGAACTCTTAGCTCTTGAAGAGAGGATGGGAACCGTGAGCACAGCTCTAACAGACGAAGCACTCTCAGATAGTCTTAAAAGAAGTATCTATCAGTCTGCGCCTTTAGATGATGCATCCAACTGTGTTAATGAGGATAAGGGTGATATCAAATGTTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGAGACTGCAATGTTCACATAAATATCATGTTGATTGTATACAGGACTGGTTGAGGTTGAAGAACTGGTGCCCTATTTGCAAAGGGTCAGCGGCACTGTCCAATTCATCGTCATCTCATTAA 1467 0.4138 MMDGNPSKKGTDGMVAPRKRISVVFRDTANTRNRNDQICSRVGCSSTANPPKVAQVRSSEKVKSSRPSMQSTSSGKEVIGSSRRTATNPAKPFIKPRRTLPSSGLQADEEGKKSTKVILTEVGKSSGVSKLRSQGNFNQRPGFRQQENESIRQVKQAVSSSKYGLRNLRCNNISDIIPSSCSSSDSTLNRKKTVIKKGNTGGESSSTVKGKKMTGSSPEGLNSGSRSGISISEARGSRSIPPSRRDNSRATVRPERSVSRYASGRFSSQGNKNPTETNEPSVELPSSPHCLDLNSPVIEELRDIMPMSPEEYDIPHSVINQNGFRRYDMENISEVLLALERIEQNEELTQEQIRLLETNSFLNGLDLYDRHRDLRLDIDDMSYEELLALEERMGTVSTALTDEALSDSLKRSIYQSAPLDDASNCVNEDKGDIKCCICQEEYVVGDEVGRLQCSHKYHVDCIQDWLRLKNWCPICKGSAALSNSSSSH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00822 488 MobiDBLite consensus disorder prediction 261 284 - -
Trre2g00822 488 MobiDBLite consensus disorder prediction 1 113 - -
Trre2g00822 488 MobiDBLite consensus disorder prediction 198 246 - -
Trre2g00822 488 SMART ring_2 435 475 IPR001841 -
Trre2g00822 488 Coils Coil 339 359 - -
Trre2g00822 488 ProSiteProfiles Zinc finger RING-type profile. 435 476 IPR001841 -
Trre2g00822 488 Pfam Ring finger domain 434 476 IPR001841 -
Trre2g00822 488 FunFam E3 ubiquitin-protein ligase arkadia 397 481 - -
Trre2g00822 488 MobiDBLite consensus disorder prediction 193 291 - -
Trre2g00822 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 63 479 IPR045191 GO:0061630
Trre2g00822 488 MobiDBLite consensus disorder prediction 128 150 - -
Trre2g00822 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 480 IPR013083 -
Trre2g00822 488 MobiDBLite consensus disorder prediction 26 88 - -
Trre2g00822 488 SUPERFAMILY RING/U-box 430 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00822 Trre-Chr2 6463307 6465449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00822 332 479 C3H Transcription Factor Family AT2G15530 43.243 1.06e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00822 - - tpra:123907431 791.956