Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00815 ATGTCTGGATTAACTTGCAATTCTTGTAACACTGAATTCAAAGATGATTCCGATCAAAAACTTCATTACAAATCCGAATGGCATCGCTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGAGTGACTGAAGCATTATTTCTAGCTAGGCAAGCTGCTCTTGCTCAAGAGAGAGATAAATCTAATGAAAGTCCTATGCTCTATAGCTGTGGATTATGTGGTAAGGGGTACAAAAGTGAAAAGGCTCATGCCGAGCATCTTAAGTCGAGAACTCATATGATGCGGGCGTCTGAAGGAGCTAGTGATTCAGATGGTAAGGCTATAATTAAGCCACTTCCACAACGCGTTGTGAATAAGCCTCCTCCTAGAAGATTGGCAGATATCTCTGCTGATGATGACGAAAGTGAAGATGAATGGGTAGAGGTTGATTCTGATGATGATCTGCTTGATGATGCTGCAAAGTCCTTGACAGATTTGAATGTGGACGAGAATGCTGATAATGATGATATGGATGAAGATGATGATGATGTTGTGGACTTAGATCCATCGTGTTGCTTTATGTGTGATAAAGAGCACAAGACGTTAGAAAACTGCATGGTTCACATGCACAAGCACCATGGGTTCTTCATTCCAGATGTTGAGTATTTGAAAGATCCAAAAGGGCTCCTCACTTATCTTGGACTAAAGGTCAAAAGGGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTAAGGAAACATATGGTAGCAAAAAATCACTGTAAAGTGCATTATGGTGACGATGACGATGAGGAGGAAGTAGAGCTGGAAGAGTTCTATGATTATACCAGCAGTTATGTTGATGAGCAAGGGAAGCAGCTAGTTGTATCCGGTGATGCTGATAACAATATAGAACTTAGTGATGGGTCTGAGCTTGTAATCACTAAGCTATCTGGTAACAAAAAATCAACCAGAACTCTAGGAAGCCGCGAATACCTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATAACGTTGCTGTTACTGCGGAATTGGCTGCAAGGTACAGGAGCATGGGTTTGGCCACTGTACAATCAAGGGAGCAACTTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCAGGCGTGGAGCAAATGCGTAGCAAGATGGGAATGAAGAGTAATGTAATTCGGAACCTGCCAAACAATGTCACCTATTAG 1233 0.4274 MSGLTCNSCNTEFKDDSDQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQERDKSNESPMLYSCGLCGKGYKSEKAHAEHLKSRTHMMRASEGASDSDGKAIIKPLPQRVVNKPPPRRLADISADDDESEDEWVEVDSDDDLLDDAAKSLTDLNVDENADNDDMDEDDDDVVDLDPSCCFMCDKEHKTLENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHMVAKNHCKVHYGDDDDEEEVELEEFYDYTSSYVDEQGKQLVVSGDADNNIELSDGSELVITKLSGNKKSTRTLGSREYLRYYRQKPRPSPANNVAVTAELAARYRSMGLATVQSREQLVRMKVLKQMNRSGVEQMRSKMGMKSNVIRNLPNNVTY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00815 410 SUPERFAMILY beta-beta-alpha zinc fingers 169 244 IPR036236 -
Trre2g00815 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Trre2g00815 410 PANTHER ZINC FINGER PROTEIN 622 1 408 IPR040025 -
Trre2g00815 410 MobiDBLite consensus disorder prediction 84 144 - -
Trre2g00815 410 SMART c2h2final6 68 92 IPR013087 -
Trre2g00815 410 SMART c2h2final6 183 205 IPR013087 -
Trre2g00815 410 SMART c2h2final6 4 28 IPR013087 -
Trre2g00815 410 SMART c2h2final6 234 261 IPR013087 -
Trre2g00815 410 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Trre2g00815 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Trre2g00815 410 MobiDBLite consensus disorder prediction 84 99 - -
Trre2g00815 410 SUPERFAMILY beta-beta-alpha zinc fingers 58 97 IPR036236 -
Trre2g00815 410 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Trre2g00815 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Trre2g00815 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00815 Trre-Chr2 6395394 6397731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00815 1 410 C2H2 Transcription Factor Family AT4G31420 64.337 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00815 K14816 - gmx:100796317 611.298