Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00810 ATGTTCTCCAGCTCTCAATTCGATGCTTCCAATGCCTTCTCTGGTGGCGGATTCATGTCATCGCAACCCAACGATTCTTCTCCGGCACCGACTAAAAACCGCGACTCTCAGGGTTTGGTTCCGGTTACGGTGAAGCAGATAAGTGAAGCTTCTCATTCTGGTGATGAAAAGTCCAATTTCTCCATCAATGGCGTAGATCTGACAAATGTGACTTTGGTTGGAATAGTGTATGAGAAAGCTGAGAGGAATACTGATGTTAATTTTGTTTTGGATGATGGAACTGGACGGATCACGTGTCGAAGATGGATTAACGAGTCTTTTGACACGAAGGAAATGGAGGAAGTAATGGATGGAAAGTATGTCCGTGTTTATGGGCACTTGAAAAGCTTTCAAGGTGTGAGGCAACTTACTGCCTTCTCTGTCAGGCCCGTGACGAATTTTGATGAGATCCCTTTTCACTTTATTGATTGCATACATAACCACCTCTGCACCAAAGTAAAGACGGAAGGAGGAGTCCCTTCTACATTTACTCCATCAAACTCGTCCATGAACACTCCTGTCAAAAGTGCATTGAATGGATCTCAAGCACCACCGTCAAATCCGGGATATGCACAATATAGCACTGATGGACTCAAGGATATTGATAAATTGGTGATTGACTATCTGCAGCAGCATTCAGACATGTCAGATGAACGGGGAATACATGTTAATGACCTAGCAAAAGAGCTCAGGCTTCCATTGGAGAAGATCATGTTGTCGCTAAAGACTCTTGGAGATGATGGTTTGGTATACTCCACCATAGATGATTTCCACTACAAACAAGCTTGA 828 0.436 MFSSSQFDASNAFSGGGFMSSQPNDSSPAPTKNRDSQGLVPVTVKQISEASHSGDEKSNFSINGVDLTNVTLVGIVYEKAERNTDVNFVLDDGTGRITCRRWINESFDTKEMEEVMDGKYVRVYGHLKSFQGVRQLTAFSVRPVTNFDEIPFHFIDCIHNHLCTKVKTEGGVPSTFTPSNSSMNTPVKSALNGSQAPPSNPGYAQYSTDGLKDIDKLVIDYLQQHSDMSDERGIHVNDLAKELRLPLEKIMLSLKTLGDDGLVYSTIDDFHYKQA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00810 275 Gene3D - 31 165 IPR012340 -
Trre2g00810 275 PANTHER REPLICATION PROTEIN A-RELATED 6 273 IPR040260 -
Trre2g00810 275 FunFam Replication protein A 32 kDa subunit 206 275 - -
Trre2g00810 275 SUPERFAMILY "Winged helix" DNA-binding domain 209 273 IPR036390 -
Trre2g00810 275 FunFam replication protein A 32 kDa subunit A-like 32 166 - -
Trre2g00810 275 SUPERFAMILY Nucleic acid-binding proteins 39 163 IPR012340 -
Trre2g00810 275 Pfam OB-fold nucleic acid binding domain 70 142 IPR004365 GO:0003676
Trre2g00810 275 Pfam Replication protein A C terminal 181 269 IPR014892 -
Trre2g00810 275 MobiDBLite consensus disorder prediction 174 204 - -
Trre2g00810 275 MobiDBLite consensus disorder prediction 1 38 - -
Trre2g00810 275 CDD RPA2_DBD_D 69 162 - -
Trre2g00810 275 Gene3D - 205 275 IPR036388 -
Trre2g00810 275 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00810 Trre-Chr2 6340361 6345040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00810 1 273 Core DNA Replication Machinery Family AT2G24490 48.746 7.12e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00810 K10739 - gmx:100802512 431.795