Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00773 ATGGGTGAGGTGGCAGTGTTGCACTCTGAACCTCTGCACTTCGAATGCAATGACACGAAACATATCATAGAAGAAGACCCTTATCCTCCAAAATCAAATCCGGAATCCTTTCCTGAAGAAGAATCAAGCCAATCTATAAACAAAAATGATTTGCAAGATAAAGGATATATGGAATATGGATGCCAACATTACCGTAGAAGATGCCGAATCAGGGCCCCCTGTTGCAATGAAATATTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACGTGGATTATAAGCATAGACATGACATGCCTCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAAACTGTATTAATTGTGGTGTTTGCATGGGCAAGTACTTCTGTGAAACATGCAAGCTCTATGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACACGAGAATTTCTTCCACTGTAACAAGTGTGGTTGTTGCTACTCAACTCTGTTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCATGCGGACATACAATCCATAAAAGCTGTCTCAATGAAATGAGAGAACATTACCAATACGCATGCCCTCTCTGTTCGAAGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACGCCGATGCCTGAACCATACCAAAATAAAATGGTTTGGATCCTGTGCAATGACTGCGGACAAACTTCTCATGTTCGGTTCCATTTCGTAGCTCAAAAATGCCTCAACTGCAAATCATATAACACACGACAAACGAGAGGCTGA 921 0.4148 MGEVAVLHSEPLHFECNDTKHIIEEDPYPPKSNPESFPEEESSQSINKNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHDMPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLYDDDISKQQYHCNGCGICRTGGHENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHYQYACPLCSKSVCDMSKVWEKLDMEIAATPMPEPYQNKMVWILCNDCGQTSHVRFHFVAQKCLNCKSYNTRQTRG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00773 306 Gene3D - 268 306 - -
Trre2g00773 306 ProSiteProfiles Zinc finger RING-type profile. 197 240 IPR001841 -
Trre2g00773 306 CDD RING-H2_Pirh2-like 196 240 - -
Trre2g00773 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 305 - -
Trre2g00773 306 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
Trre2g00773 306 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Trre2g00773 306 MobiDBLite consensus disorder prediction 23 49 - -
Trre2g00773 306 Pfam Zinc-ribbon 244 302 IPR039512 -
Trre2g00773 306 SMART ring_2 197 239 IPR001841 -
Trre2g00773 306 Pfam Ring finger domain 196 239 IPR001841 -
Trre2g00773 306 SUPERFAMILY RING/U-box 196 244 - -
Trre2g00773 306 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Trre2g00773 306 SUPERFAMILY CHY zinc finger-like 58 132 IPR037274 GO:0008270
Trre2g00773 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 259 IPR013083 -
Trre2g00773 306 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00773 Trre-Chr2 6093695 6096908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00773 59 306 C2H2 Transcription Factor Family AT3G18290 39.526 8.82e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00773 K10144 - gmx:100803569 589.726