Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00757 ATGGGACATTCAAAGAAAGAAGAAGAAAGAGCTGAAAGAATAATTCGAGGTTTATTAAAACTTCCCGAAAATCGAAGATGCATCAATTGCAATACTTTGGGACCACAATATGTTTGTACAACTTTCTCTACATTTGTCTGCACAAATTGCAGTGGACTACATCGAGAGTTCACGCATCGAGTAAAATCTGTGTCAATGGCAAAATTTACACCAGAAGAAGTCACTGCTCTTCAAGCTGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGGTTGGGATCCTCTACGACATTCTTATCCCGATTCCAGTAATATGCACAGACTTAGAGAATTTATCAAGCATGTTTATGTGGATAGAAAATATACCGGCGAAAGAAGTCAAGAAAATCTTCCCAGGATTAAATTGAATGACAAAGAGGAGTCCAATGAGAAGCTGAAGAGTAGTTCATTTCGATTAGAGTTCATAAGTCCGAAGTCAAGTCCTGCTACAAGAAGTTCCAGTGCAAGAAGCGATGACGCGAGTGTTAGATATCTATATGATGAAAGTAGAAGTCCTAAATATGTACAAAAATATACAAGAAATGGAGGATTCATCAGAAGTCCTATAAAGTTTGAGGTTGTTGATGATAGGTTTCGAGACGACGAATATAAAAACCGCAGACAATCGAATCTTGAATCAAAGCTAAGACAACTTTCACTTGATAGTCGTAAGAATGTGGACAGAGCCCAAGCTCCGGTTCAACCATCTTCGGGTGAAATGACGATGCAGAATGATTCATCTTCACAAGTTACAACTTCTGGTGGAGAAGGTTCTGTTGAGGGAAAACCATCTGAACAAAAGAGTAATAAATCTCAAGCTTCTGAAACTGCTATTGTAGCTGTAGAAGAAACACCAAGTATGACACAAGAAAGTGAAAATAATTGGGCCTCATTTGAAACTTCTACAAAGGAAAATGTTTCTGAAACTTCAAACACCAACACCATGAAATCTCCTACAACAGAACCAACACCTGAGGCAAAAATTTCAAGTCCTTTAGACCTTTTACTTCTTGAATTGTCAGGCTCTTTTGCTCCTGCCAGTGGCGAAAATGTTTCGACAACTTCAACGGTAGAAAAGGCCTCTACATTGGATTTTCCATCTACTTCAATGGAGGAGACAAATTCATCAGCTTCTGAACTGGCACAACCTTCTAATGAAGCTACTCCACCACAATCTGAGTTACTTGAGACAGAAGATTCAATTGAAGTTTCACATGCACATAAAGCACAAACAGAAGATTCCATTGAAGTTTTACATGCAAATACACCACAAACAGAAGATTCAATTGAAGTTTCACATGCACATAAACCACAAACCGAATATTCCGTTGAATTTTCACATGCACACAAAGCAAAAACCATGCAATCAACACAACCAACAGAATCACCAAATAAAGATGTCGCTTCAAATAATGAGACGCAGCCGTCGTTTTTTACTAATAAACATGACTCATCAAATGCTTTTGATGAACTTTCTTCTCAATCCGCCTCAAATCCTACTCAAGACACTCGACCTGATGTTAGTTCCCAGCCTAGTATTGTAGAAACCAAGTCTAGCGGAAGAATAGAACTTCCAGAGGACCTTTTTACTACAAGGTACTTTTCTGGTCCTGCACCACATCCAAGTTGGCAGAATCTTCAATCTCATGTCATGAGATATGGCATACAAGGGTTAATGTATTATCCTAATGCAGTGCCTCCTCACACAGCACTTCCCATTGCACCAAAATCCATTAACCCTTTTGAAGTAACTGAAGTGAGAGGTCTATCTCATGCATCATCAGTTCCTAGTTTGACATCAATGCATGGTGTGCTGCCAGCTACATCACATAGAACAGGATTAATGCATACTTCTTCAAGTCTTGGTTCTTTAGATACAATGATGCCTCAGTCCACAAGTTATGCATCCCCAATTACTGGTGTGTACTTTGATCAAGTTAATAATGAAGATCAATATAATAGATCAAAAATAGTAAACACCTACAATAGTGACATAACTGGTTTTGGATCACTAGAAACAATTCAACAACCATATGGGGCATATGGTACACTTGGAATTCCAAATTCTTTTTCCAATACAAGAAGAAATCCATTTGAATAG 2142 0.3824 MGHSKKEEERAERIIRGLLKLPENRRCINCNTLGPQYVCTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKGWDPLRHSYPDSSNMHRLREFIKHVYVDRKYTGERSQENLPRIKLNDKEESNEKLKSSSFRLEFISPKSSPATRSSSARSDDASVRYLYDESRSPKYVQKYTRNGGFIRSPIKFEVVDDRFRDDEYKNRRQSNLESKLRQLSLDSRKNVDRAQAPVQPSSGEMTMQNDSSSQVTTSGGEGSVEGKPSEQKSNKSQASETAIVAVEETPSMTQESENNWASFETSTKENVSETSNTNTMKSPTTEPTPEAKISSPLDLLLLELSGSFAPASGENVSTTSTVEKASTLDFPSTSMEETNSSASELAQPSNEATPPQSELLETEDSIEVSHAHKAQTEDSIEVLHANTPQTEDSIEVSHAHKPQTEYSVEFSHAHKAKTMQSTQPTESPNKDVASNNETQPSFFTNKHDSSNAFDELSSQSASNPTQDTRPDVSSQPSIVETKSSGRIELPEDLFTTRYFSGPAPHPSWQNLQSHVMRYGIQGLMYYPNAVPPHTALPIAPKSINPFEVTEVRGLSHASSVPSLTSMHGVLPATSHRTGLMHTSSSLGSLDTMMPQSTSYASPITGVYFDQVNNEDQYNRSKIVNTYNSDITGFGSLETIQQPYGAYGTLGIPNSFSNTRRNPFE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00757 713 MobiDBLite consensus disorder prediction 463 531 - -
Trre2g00757 713 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Trre2g00757 713 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Trre2g00757 713 MobiDBLite consensus disorder prediction 412 428 - -
Trre2g00757 713 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Trre2g00757 713 MobiDBLite consensus disorder prediction 358 535 - -
Trre2g00757 713 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Trre2g00757 713 MobiDBLite consensus disorder prediction 359 411 - -
Trre2g00757 713 PANTHER ARFGAP/RECO-RELATED 1 713 IPR044820 GO:0005096
Trre2g00757 713 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre2g00757 713 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre2g00757 713 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre2g00757 713 MobiDBLite consensus disorder prediction 230 346 - -
Trre2g00757 713 MobiDBLite consensus disorder prediction 243 340 - -
Trre2g00757 713 CDD ArfGap_AGFG 12 122 - -
Trre2g00757 713 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Trre2g00757 713 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00757 Trre-Chr2 5993670 5998217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00757 11 117 C2H2 Transcription Factor Family AT4G05330 34.821 1.83e-12 67.4