Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00752 ATGGAGCGACCCGGGAGCTTCAACGACGGTCAACATATTATAGAAATATCTGGGAATGTCGAGGCTTCTACATCCGCATCGTCTCGTGATAGACATTTTGATGGTGTAGACACTGTGCGTGTAGAAAGAATAGGTGGTGTGCAGGTGTCTGGTGGTCAGCCTTCGGTTTCAACCTCAGGTGTATCAATTGGATCAAATAGTAGGAATTCTTCATTTGTAAGACGGGGGGATGCTCGTCGGAGTAGGAGTCCTGTTCATTCTGGGTTATGGATATCTATTGAGCTAGTCCTGTTAGTAAGCCAGATTGTTGCGTCTGTCGTTGTTTTGGCATTGTCAAGGCATGAGCATCCACATACACCGTTGTTTCAATGGATAGTGGGCTATGCTTCTGGATGTGTTGCTACACTTCCTCTTCTTTTTTGGCGGTATTATAATCATAACCATATGCGAGAACAAGATACAACTCAGTCACGTCAAACATCTCCTCGGGTTAGTGATCCTTCTGGGACACATCTGTCCACTTCTAGAAATAATGGAGGAGATGTCGGTCAGACTGCTGCTGCATCTTCTAGAGGAACTCAAGCTTCAATATTGATGAATAGAAGAACGAAGATACTTGTGGAGTACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTATGGATCTTTGGGGGACATTCTTCTGCTGATGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTGCATTTAGCTGCATTGGTTATGCTATGCCTTTCATTCTCTGTTCAACCATCTGCTGTTGTCTCCCATGTATAATTTCCATCCTCGGTGTTAGAGAGGATCTCTCACAAAACAGAGGAGCAACTTCTGAATCCATTAATGCTCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATAGTGAAAACAATTCTGCTAATATAGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATCTCCGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGACGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCATTGATAAGTGGTTGAAGATAAATGCACTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAGACCTAACAGGATTGAGGTCTGGAGAAGATGCCACCCAAACAACGGGATGA 1212 0.4299 MERPGSFNDGQHIIEISGNVEASTSASSRDRHFDGVDTVRVERIGGVQVSGGQPSVSTSGVSIGSNSRNSSFVRRGDARRSRSPVHSGLWISIELVLLVSQIVASVVVLALSRHEHPHTPLFQWIVGYASGCVATLPLLFWRYYNHNHMREQDTTQSRQTSPRVSDPSGTHLSTSRNNGGDVGQTAAASSRGTQASILMNRRTKILVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLSQNRGATSESINALPTYKFKMKKNKRNSENNSANIEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCIDKWLKINALCPLCKSEVGEDLTGLRSGEDATQTTG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00752 403 SMART ring_2 341 381 IPR001841 -
Trre2g00752 403 MobiDBLite consensus disorder prediction 49 75 - -
Trre2g00752 403 FunFam E3 ubiquitin-protein ligase 324 390 - -
Trre2g00752 403 Pfam Ring finger domain 341 382 IPR001841 -
Trre2g00752 403 MobiDBLite consensus disorder prediction 50 72 - -
Trre2g00752 403 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Trre2g00752 403 MobiDBLite consensus disorder prediction 154 188 - -
Trre2g00752 403 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 385 - -
Trre2g00752 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 389 IPR013083 -
Trre2g00752 403 MobiDBLite consensus disorder prediction 151 188 - -
Trre2g00752 403 SUPERFAMILY RING/U-box 332 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00752 Trre-Chr2 5948755 5951477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00752 74 387 C3H Transcription Factor Family AT1G80400 57.680 1.32e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00752 - - gmx:100778728 652.129