Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00749 ATGAATATCGAAAATGGTGAAAATGTGAGAATGACTCGTGCAAGAGCTAGAGCCATGGAAGCATCTTCAGGAAATGAAAAAGCTGTTGGACTTAGAGATATAACCAACATTTCAACAAAATCTCATCTTAAGCGTATTCAAACCTCGAATTTTCAGAAGAGTGAAGGTAATAAGAAGAGAAAGATTAAGGCAGCTTCAAAAGATCATGTTCCCTTACAAGTTGTGACAACCAAAGAGGATGCTAAGACAAAGTTAGCTGAAGATTCATCAATAATGATGGAAAAGTCACTGCAAGTGCAACCTTCTGTTGAAAATCCACTGCTTTCAATGCAGGATTCTGTCGATTCTCCAGATAAAGACATAAGTATGATATGTGAGAAACTAAGAGACTCAGTTGACTTGGGAATTGTGGACATTGATTCAAAGTTAAAGGATTCTCTTTTTTGGACTTCTTATGCCCCTGATATATACAATAGTATTTATGTCAGAGAGTGTGAAAGGAGACCATCAGTTGATTACATGGAAAAGTTGCAGCAATACATCACTCCAACTATGCGGGGAATTCTGGTTGATTGGCTTGTCGAGGTTACTGAGGAATATCAGCTAGTTCCTGACACACTTTACCTTGCTGTGAATCTCATTGATCGATTCCTTTCTCAGCGTTTGGTTACAAAACAAACGCTCCAGTTGCTCGGTATCACTTGCATGCTGATTTCATCTAAGTATGAAGAGATTGTGCCTACTCCATTACAAGATTTATGCGACATCACAGATAATACATACTCGAAACAACAGGTCTTGAAAATGGAGAAAGAGGTTCTAAATCTTTTGCATTTCCAATTAGCTGTCCCTACAATCAAAACATTTCTCAGGAAGTTCATTGTTGTAGCACAATCTTCTTTCAAGGTTGTTTATGATGAACTGGAATTCATTGCAAATTATTTAGGAGAGCTTGCTCTTGTTGAATACAGCTTCTTGCAGTTTCGACCTTCCAAGATAGCTGCATCTGCGGTTTTTCTTGGCAGATGGACCCTCGACCAATCAGAACATCCATGGAATCCAACTCTAGAGCACTATACAAATTACAAAGCATCTGAGCTGAAAACTACTGTCCTTGCACTGCTGGATTTGCAACTTAATACCAAAGGTTGTTGTCTGGCTGGTGTACGCGACAAATATAACCAACAGAAGTTCCAAAGGGTGGCGAACTTGATTCCGAAACCTGTGGAATCTCTTTTCTAG 1242 0.3905 MNIENGENVRMTRARARAMEASSGNEKAVGLRDITNISTKSHLKRIQTSNFQKSEGNKKRKIKAASKDHVPLQVVTTKEDAKTKLAEDSSIMMEKSLQVQPSVENPLLSMQDSVDSPDKDISMICEKLRDSVDLGIVDIDSKLKDSLFWTSYAPDIYNSIYVRECERRPSVDYMEKLQQYITPTMRGILVDWLVEVTEEYQLVPDTLYLAVNLIDRFLSQRLVTKQTLQLLGITCMLISSKYEEIVPTPLQDLCDITDNTYSKQQVLKMEKEVLNLLHFQLAVPTIKTFLRKFIVVAQSSFKVVYDELEFIANYLGELALVEYSFLQFRPSKIAASAVFLGRWTLDQSEHPWNPTLEHYTNYKASELKTTVLALLDLQLNTKGCCLAGVRDKYNQQKFQRVANLIPKPVESLF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00749 413 PANTHER CYCLINS 100 365 IPR039361 -
Trre2g00749 413 SUPERFAMILY Cyclin-like 283 406 IPR036915 -
Trre2g00749 413 Gene3D - 155 403 - -
Trre2g00749 413 FunFam Cyclin A1 271 403 - -
Trre2g00749 413 CDD CYCLIN_AtCycA-like_rpt2 284 398 - -
Trre2g00749 413 SMART Cyclin_C_2 284 407 IPR004367 -
Trre2g00749 413 SUPERFAMILY Cyclin-like 145 281 IPR036915 -
Trre2g00749 413 ProSitePatterns Cyclins signature. 186 217 IPR006671 -
Trre2g00749 413 PIRSF Cyclin_A_B_D_E 2 412 IPR046965 GO:0016538|GO:0044772
Trre2g00749 413 SMART cyclin_7 191 275 IPR013763 -
Trre2g00749 413 SMART cyclin_7 288 376 IPR013763 -
Trre2g00749 413 Pfam Cyclin, C-terminal domain 284 405 IPR004367 -
Trre2g00749 413 Pfam Cyclin, N-terminal domain 155 281 IPR006671 -
Trre2g00749 413 Gene3D - 169 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00749 Trre-Chr2 5936680 5941183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00749 8 413 Core Cell Cycle Gene Families AT5G25380 49.306 1.21e-128 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00749 K06627 - gmx:100777132 474.937