Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00739 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAACGAGAAGCATTCAGAAGTTGCCGCGTCATATATCGAGACACAGTTAATTAAGGCGAGGGAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCCACAACCTCAGCAGTCACAACAACATCAACAGCAGCAGCAGCAACAACAACAGCAGATGCAGATGCAACAAATGCTGTTACAGAGGCAGCATCAGCAGCAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCATCAGCAACAACAACAGCAGCAGCCGCAGCATCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAAGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTGGTGCAAACGGGTTAGTTGGAAACCATAGCACTGCAAATGCAATAGCAACGAAGATGTACGAGGAAAGGTTAAAAATTCCCCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGTGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCATCAGGGCAAGTTTTGCATGGTTCTGCTGGTGCAATGTCACCTCAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGATATAAAAACTGAGATTAATCCTGTTATAAACCCTAGAGCTGCGGGTCCTGAAGGATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACCCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGTTTACTGCAGCAACAAAAACCTTTCATACAGTCTCCACAGCCTTTTCATCAACTTCCAATGTTGACAGCACAACATCAGCAACAGCTTATGTTAGCACAACAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAGTAATAGGAATATGGGCGTAGGTAAGGATGGCCTTCCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCGCCCCTTCAAGCAGGTGGCCCTCCTTTTCCTCGTAGTGATACGGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAACATACTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGTGGCGGTAGTGTCACTGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCAGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCCAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCATCAGGATCAACTCATACACCAGGCGATGTGATATCAATGCCTTCTTCTATACCTCATAATAGTAGTTCTTCTAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGGCAGATGTTGACCGCTTTGTTGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACGGACCATAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCAAGCACAAGCAAAGTTGTTTGTACCCATTTCTCATCCGATGGAAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGTTATTCCCTTCGTACCTTCACTGGCCATTCTGCATCTGTTATGTCACTAGACTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGCGAGATAAGATATTGGAGTATTAACAACGGCAGTTGTGCTAGAGTGTCAAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAAATACCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCAATACATTCTGTGTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTCAGCGAAGACTCTGTCAGGGTCTGGACTCTTGGATCTGGAAATGAAGGTGAATGTGTTCACGAGCTTAGCTGTAATGGCAATAAGTTTCACTCATGCGTTTTCCATCCAACGTATTCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTATGGAACATGACCGAGAACAAAACGATGACTCTATCTGCTCACGACGGTCTTATTGCTGCTCTGGCCGTCTCAACTGTAAACGGTTTGGTCGCCTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAATGA 2706 0.4516 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQQHQQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQQQQGRDRAHLLNGGGANGLVGNHSTANAIATKMYEERLKIPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAAPGQPSGQVLHGSAGAMSPQVQARSQQLPGSTPDIKTEINPVINPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTAQHQQQLMLAQQNLASPSASDDSRRLRMLLSNRNMGVGKDGLPNPVGDVVSNVGSPLQAGGPPFPRSDTDMLMKLKLAQLQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKVGGGSVTGDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSSIPHNSSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDHRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSYLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGKYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 658 IPR001680 GO:0005515
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 694 IPR001680 GO:0005515
Trre2g00739 901 MobiDBLite consensus disorder prediction 382 553 - -
Trre2g00739 901 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 744 IPR001680 GO:0005515
Trre2g00739 901 MobiDBLite consensus disorder prediction 94 113 - -
Trre2g00739 901 FunFam Transcriptional corepressor LEUNIG 745 901 - -
Trre2g00739 901 MobiDBLite consensus disorder prediction 424 464 - -
Trre2g00739 901 Gene3D - 600 746 IPR015943 GO:0005515
Trre2g00739 901 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 901 - -
Trre2g00739 901 Pfam LisH 10 36 IPR006594 GO:0005515
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 869 901 IPR001680 GO:0005515
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 869 901 - -
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 824 IPR001680 GO:0005515
Trre2g00739 901 MobiDBLite consensus disorder prediction 470 553 - -
Trre2g00739 901 Pfam WD domain, G-beta repeat 864 901 IPR001680 GO:0005515
Trre2g00739 901 Pfam WD domain, G-beta repeat 698 735 IPR001680 GO:0005515
Trre2g00739 901 Pfam WD domain, G-beta repeat 618 648 IPR001680 GO:0005515
Trre2g00739 901 Pfam WD domain, G-beta repeat 657 691 IPR001680 GO:0005515
Trre2g00739 901 Pfam WD domain, G-beta repeat 780 814 IPR001680 GO:0005515
Trre2g00739 901 SMART Lish 8 40 IPR006594 GO:0005515
Trre2g00739 901 MobiDBLite consensus disorder prediction 238 279 - -
Trre2g00739 901 MobiDBLite consensus disorder prediction 152 190 - -
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 740 - -
Trre2g00739 901 MobiDBLite consensus disorder prediction 152 175 - -
Trre2g00739 901 SMART WD40_4 777 815 IPR001680 GO:0005515
Trre2g00739 901 SMART WD40_4 610 649 IPR001680 GO:0005515
Trre2g00739 901 SMART WD40_4 652 691 IPR001680 GO:0005515
Trre2g00739 901 SMART WD40_4 695 735 IPR001680 GO:0005515
Trre2g00739 901 SMART WD40_4 862 901 IPR001680 GO:0005515
Trre2g00739 901 SMART WD40_4 821 860 IPR001680 GO:0005515
Trre2g00739 901 CDD WD40 613 901 - -
Trre2g00739 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 694 - -
Trre2g00739 901 SUPERFAMILY WD40 repeat-like 611 901 IPR036322 GO:0005515
Trre2g00739 901 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre2g00739 901 Coils Coil 122 154 - -
Trre2g00739 901 MobiDBLite consensus disorder prediction 237 279 - -
Trre2g00739 901 Gene3D - 747 901 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00739 Trre-Chr2 5859535 5867537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00739 635 864 U-box Gene Family AT2G33340 31.707 5.81e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre2g00739 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00739 - - gmx:100779972 1220.3