Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00738 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAACGAGAAGCATTCAGAAGTTGCCGCGTCATATATCGAGACACAGTTAATTAAGGCGAGGGAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCCACAACCTCAGCAGTCACAACAACATCAACAGCAGCAGCAGCAACAACAACAGCAGATGCAGATGCAACAAATGCTGTTACAGAGGCAGCATCAGCAGCAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCATCAGCAACAACAACAGCAGCAGCCGCAGCATCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAAGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTGGTGCAAACGGGTTAGTTGGAAACCATAGCACTGCAAATGCAATAGCAACGAAGATGTACGAGGAAAGGTTAAAAATTCCCCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGTGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCATCAGGGCAAGTTTTGCATGGTTCTGCTGGTGCAATGTCACCTCAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGATATAAAAACTGAGATTAATCCTGTTATAAACCCTAGAGCTGCGGGTCCTGAAGGATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACCCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGTTTACTGCAGCAACAAAAACCTTTCATACAGTCTCCACAGCCTTTTCATCAACTTCCAATGTTGACAGCACAACATCAGCAACAGCTTATGTTAGCACAACAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAGTAATAGGAATATGGGCGTAGGTAAGGATGGCCTTCCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCGCCCCTTCAAGCAGGTGGCCCTCCTTTTCCTCGTAGTGATACGGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAACATACTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGTGGCGGTAGTGTCACTGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCAGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCCAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCATCAGGATCAACTCATACACCAGGCGATGTGATATCAATGCCTTCTTCTATACCTCATAATAGTAGTTCTTCTAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTTGACCGCTTTGTTGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACGGACCATAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCAAGCACAAGCAAAGTTGTTTGTACCCATTTCTCATCCGATGGAAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGTTATTCCCTTCGTACCTTCACTGGCCATTCTGCATCTGTTATGTCACTAGACTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGCGAGATAAGATATTGGAGTATTAACAACGGCAGTTGTGCTAGAGTGTCAAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAAATACCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCAATACATTCTGTGTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTCAGCGAAGACTCTGTCAGGGTCTGGACTCTTGGATCTGGAAATGAAGGTGAATGTGTTCACGAGCTTAGCTGTAATGGCAATAAGTTTCACTCATGCGTTTTCCATCCAACGTATTCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTATGGAACATGACCGAGAACAAAACGATGACTCTATCTGCTCACGACGGTCTTATTGCTGCTCTGGCCGTCTCAACTGTAAACGGTTTGGTCGCCTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAATGA 2733 0.4508 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQQHQQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQQQQGRDRAHLLNGGGANGLVGNHSTANAIATKMYEERLKIPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAAPGQPSGQVLHGSAGAMSPQVQARSQQLPGSTPDIKTEINPVINPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTAQHQQQLMLAQQNLASPSASDDSRRLRMLLSNRNMGVGKDGLPNPVGDVVSNVGSPLQAGGPPFPRSDTDMLMKLKLAQLQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKVGGGSVTGDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSSIPHNSSSSKPLMMFGTDGTGTLTSPSNQLWDDKDIELQADVDRFVEDGSLDDNVESFLSHDDTDHRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSYLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGKYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00738 910 MobiDBLite consensus disorder prediction 382 553 - -
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 711 749 - -
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 793 833 IPR001680 GO:0005515
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 878 910 - -
Trre2g00738 910 MobiDBLite consensus disorder prediction 94 113 - -
Trre2g00738 910 Gene3D - 756 910 IPR015943 GO:0005515
Trre2g00738 910 Gene3D - 591 755 IPR015943 GO:0005515
Trre2g00738 910 MobiDBLite consensus disorder prediction 424 464 - -
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 878 910 IPR001680 GO:0005515
Trre2g00738 910 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 910 - -
Trre2g00738 910 FunFam Transcriptional corepressor LEUNIG 754 910 - -
Trre2g00738 910 SUPERFAMILY WD40 repeat-like 620 910 IPR036322 GO:0005515
Trre2g00738 910 SMART WD40_4 704 744 IPR001680 GO:0005515
Trre2g00738 910 SMART WD40_4 786 824 IPR001680 GO:0005515
Trre2g00738 910 SMART WD40_4 619 658 IPR001680 GO:0005515
Trre2g00738 910 SMART WD40_4 830 869 IPR001680 GO:0005515
Trre2g00738 910 SMART WD40_4 871 910 IPR001680 GO:0005515
Trre2g00738 910 SMART WD40_4 661 700 IPR001680 GO:0005515
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 711 753 IPR001680 GO:0005515
Trre2g00738 910 MobiDBLite consensus disorder prediction 470 553 - -
Trre2g00738 910 Pfam LisH 10 36 IPR006594 GO:0005515
Trre2g00738 910 SMART Lish 8 40 IPR006594 GO:0005515
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 703 IPR001680 GO:0005515
Trre2g00738 910 MobiDBLite consensus disorder prediction 238 279 - -
Trre2g00738 910 CDD WD40 622 910 - -
Trre2g00738 910 MobiDBLite consensus disorder prediction 152 190 - -
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 626 667 IPR001680 GO:0005515
Trre2g00738 910 MobiDBLite consensus disorder prediction 152 175 - -
Trre2g00738 910 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre2g00738 910 Pfam WD domain, G-beta repeat 873 910 IPR001680 GO:0005515
Trre2g00738 910 Pfam WD domain, G-beta repeat 789 823 IPR001680 GO:0005515
Trre2g00738 910 Pfam WD domain, G-beta repeat 707 744 IPR001680 GO:0005515
Trre2g00738 910 Pfam WD domain, G-beta repeat 666 700 IPR001680 GO:0005515
Trre2g00738 910 Pfam WD domain, G-beta repeat 627 657 IPR001680 GO:0005515
Trre2g00738 910 Coils Coil 122 154 - -
Trre2g00738 910 ProSitePatterns Trp-Asp (WD) repeats signature. 687 701 IPR019775 -
Trre2g00738 910 MobiDBLite consensus disorder prediction 237 279 - -
Trre2g00738 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 668 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00738 Trre-Chr2 5859535 5867537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00738 644 873 U-box Gene Family AT2G33340 31.707 5.12e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre2g00738 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00738 - - gmx:100779972 1247.26