Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00735 ATGTCTAGCAGAGATTCTCCAAAGGATAAGCAGTCCATAATCCATAGCTTCAATGATGAAAATAGCAAAGCGAAGGTTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGATGTTGTATGGAATCCTTCAGTCGAAAGACAAGCTATCAGCCGAGCCTATAGGATTGGACAGAAGAAGGTGGTATACACATACCATCTTCTCGCTGAAGGGACATCCGAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGATCGAATAGCTGAGCTCCTTTTTTCAGCTAAAAATGCTACTGATAATGATGATGTGCCCAAGAGACGTGCCGTGAACTTTGAAGATAGTGTTCTTGATAAGATGACTCAGCACGAAAAACTCATAGACATGTTTGTTAAGTGCGTAGTACTGAGGAAGGAGCGTGATTTGGTCTGA 465 0.4237 MSSRDSPKDKQSIIHSFNDENSKAKVLLAATKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTSEEEKYGKQAEKDRIAELLFSAKNATDNDDVPKRRAVNFEDSVLDKMTQHEKLIDMFVKCVVLRKERDLV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00735 154 SMART helicmild6 1 69 IPR001650 -
Trre2g00735 154 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 152 IPR044567 GO:0080188
Trre2g00735 154 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Trre2g00735 154 Pfam Helicase conserved C-terminal domain 5 69 IPR001650 -
Trre2g00735 154 Gene3D - 1 149 IPR027417 -
Trre2g00735 154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 113 IPR027417 -
Trre2g00735 154 CDD SF2_C_SNF 6 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00735 Trre-Chr2 5790067 5790531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00735 8 127 RAD5 or RAD16-like Gene Family AT5G05130 39.669 6.37e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00735 K10875 - lja:Lj1g3v3609480.1 203.756