Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00721 ATGAATATTGGATTAAAGTCTTATAACCGTAATAACAATAACAATAACAGTGAAAATCAAATCCTCAAAGATGATGCCGGTAGCCAATACAGTCTTACCGGAATCATGCTTCCACCTCTCGGCGCCGCCACCAACAACCGCACCGAGCTCCCACGTTGGATCATCTCCCCTAACAACCGTACTTATCAACAATGGTGCAAGTTTTTGATGATATGGGTTTTCTACACTGCATGGGTGTGTCCTTTTGAATTTGGGTTTCTTAAGGCATCAAAAGGTCCAATCACTTATGTAGACAACATTGTGAATGGATTTTTTTTTGCTGACATTGTTCTTACTTTCTTTGTTGCCTATCCTGACAAAACTACTTTTCTACTTGTCGGCGATCAAAAGAAAATCGCCAAGAGATATATGAAATCCTGGTTTTTCTTTGATTTGGTCTCTATCGTTCCGTATGAATTGGTTAAGAACCGCTTGCCAGCATCACTCCAGACATATGGTTACTTCAATATTCTTCGCCTTTGGCGCCTTCATAGAGCCAGTGCTATGTTTTCGAGGTTAGAAAAGGATAGGAATTATAACTATTTTTGGGTGCGATGTTTAAAACTTATATGCGTAACACTGTTTTCGGCGCATGTAGCAGCGTGTTTTTTCTATTTTCTTGCTACAGGACACAACCATAAAAAAGTTACATGGTTATCACTTGTTTCAAATGGTTCTGACCTAAGTATGTGGGATGGTTATGTAACATCATTATATTGGTCCATAGTGACTCTTTCATCAGTTGGTTATGGAGATCTGCATCCTGTTAGTACAGATGAAATGGTTTTTTGCATTTTTTACATGATGTTCAATTTTGGACTTTCTGCATATCTTATAGGAAACATGACCAATTTGGTTGTTCATTGGACACAAAGAACTAAGAGATATAGAGATACTGTCCAATCTGCATCGAATTTTGCTCATAGGAATCAGTTACCTAAACGTTTGCAAGATCAGATATTTTCTCATTTTCATATGAAGTACAAAATAGATTTGGAAGGGCTGGAACAACAAGAAATAATTGGTTCCCTTCCGAAAGCTATTCAGTCGAGCATCGCACACCACCGGTTCTTTGATGTTATCAAAGAAGCATACTTGTTTAAGGGAGTGTCAAATGACCTGCTATTTCAACTGGTGACAGAGTTGAAGGCTGAGTTTTTTCCTCCAAGAGAAGATGTAATCTTGCAGAATGAATCACCAACTGATTTTTATATATTGTCCATTGGATCTGTTGGACTTAGCATTCAAGAGAACGGAATAGAACGGGCTTTTAAAGAAATAAAGTCATCTCAGGTTTTTGGAGAAATAGGAGTGCTATGTTACAGGCCACAACTTTTTACCGCTCGGACCAAGCAATTAAGCCAAATCTTGCGTTTGAGTCGAACATCATTTCTAAACATTGTTCATAACAATGTTGAAGACGGAACAATTATCATGAACAATTTTCTCAATCATGTGCACGATTTAAGTTTAACGTACCCTATCATGGTAGGATTTATGGCTGAAATACAGACATATTTGTCAACAGGCAAAATAGATTTGCCTATAAGTTTAGTATTTGCAGCTAACAAAGATGATGATATGTTGTTGCATCAATTGCTAAAAAAAGGCTCAGATCCAAATGAAATAGATCACAAAACTGGAAAGACACCACTGCATGTTGCAGCTTTTCAAGGCAATGATCATTGTGTGGCTTTGCTTCTAGAATTTGGGGCTGATCCCAACATACAAGACTTTGAAGGAAATATATCACTATGTGAAGCAATGAAAGGAGGGCATGAATTAGTGAAAAAACTACTTATAGACAATGGTGCAAATATATCTTATGCTAATGTGGCTCCTTTAGCGATCTTCGCTGTTGAGAAAAATGACATTCAATTGCTAAAAGATGTTATGAAACTTGGTGGTGATATTGTGAAAAACTCCACAAAAGAAGGAACCACTGCACTTCATGCTGCTGTATGTGAAGGAAATTTTGAAATAGTTAAGTTTCTTGTAGAACAAGGAGCAAATATTGATAAGCAAGATAAAGTCGGTTGGACTCCAAGAACTTTAGCAGATCATCAATGCCATGAAGAGATAAAAAATATGTTTAAAGAAATTGAACAAGATGATAAAATTTCCTATGTTATTCCTCCAATTCCAAATGAAAATGGAGGGTCAATTATTGCTAAGTCTTACAGTGACCCTTCTTTGCTAGCTATGTCTCAAGGTGGTAGCTTCCGACCTAATCAAGAGTTGACATCTTTGAATAATCATCAAGGAAGAACGGTTAGCCCTTTTAGGAATTTTGTTTTTGGAATGAATGCAGCGGCTAATCGAGATAAATATAACTTTCCTGCATCTCAAGACAGTTCAACTACAACTTCTACACGAGCGAATGAATTGCGGATTAGAGTAATTCTTAGTCATGAAGAAAAAAGTGAACATCGTAAAAGGCTTGTTTTTCTACCACAGTCCCTTCAAGAGCTGCTAGATGTTGGTGCTCAAAAGCTTGGCTTCTCTCCCTCTAAAATTTTGACTGAAGATGGAGCTGAAATTGAAGATATTAACTTGATTAGAGAGGGTGATCATCTTATTCTTGTATGA 2628 0.371 MNIGLKSYNRNNNNNNSENQILKDDAGSQYSLTGIMLPPLGAATNNRTELPRWIISPNNRTYQQWCKFLMIWVFYTAWVCPFEFGFLKASKGPITYVDNIVNGFFFADIVLTFFVAYPDKTTFLLVGDQKKIAKRYMKSWFFFDLVSIVPYELVKNRLPASLQTYGYFNILRLWRLHRASAMFSRLEKDRNYNYFWVRCLKLICVTLFSAHVAACFFYFLATGHNHKKVTWLSLVSNGSDLSMWDGYVTSLYWSIVTLSSVGYGDLHPVSTDEMVFCIFYMMFNFGLSAYLIGNMTNLVVHWTQRTKRYRDTVQSASNFAHRNQLPKRLQDQIFSHFHMKYKIDLEGLEQQEIIGSLPKAIQSSIAHHRFFDVIKEAYLFKGVSNDLLFQLVTELKAEFFPPREDVILQNESPTDFYILSIGSVGLSIQENGIERAFKEIKSSQVFGEIGVLCYRPQLFTARTKQLSQILRLSRTSFLNIVHNNVEDGTIIMNNFLNHVHDLSLTYPIMVGFMAEIQTYLSTGKIDLPISLVFAANKDDDMLLHQLLKKGSDPNEIDHKTGKTPLHVAAFQGNDHCVALLLEFGADPNIQDFEGNISLCEAMKGGHELVKKLLIDNGANISYANVAPLAIFAVEKNDIQLLKDVMKLGGDIVKNSTKEGTTALHAAVCEGNFEIVKFLVEQGANIDKQDKVGWTPRTLADHQCHEEIKNMFKEIEQDDKISYVIPPIPNENGGSIIAKSYSDPSLLAMSQGGSFRPNQELTSLNNHQGRTVSPFRNFVFGMNAAANRDKYNFPASQDSSTTTSTRANELRIRVILSHEEKSEHRKRLVFLPQSLQELLDVGAQKLGFSPSKILTEDGAEIEDINLIREGDHLILV 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00721 875 Pfam Cyclic nucleotide-binding domain 399 483 IPR000595 -
Trre2g00721 875 Coils Coil 5 25 - -
Trre2g00721 875 Pfam KHA, dimerisation domain of potassium ion channel 811 874 IPR021789 -
Trre2g00721 875 PANTHER POTASSIUM CHANNEL AKT1 28 874 IPR045319 GO:0005249|GO:0006813
Trre2g00721 875 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515
Trre2g00721 875 PRINTS Ankyrin repeat signature 674 688 IPR002110 GO:0005515
Trre2g00721 875 ProSiteProfiles Ankyrin repeat region circular profile. 658 690 - -
Trre2g00721 875 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g00721 875 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g00721 875 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g00721 875 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g00721 875 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g00721 875 Pfam Ankyrin repeats (3 copies) 601 689 IPR002110 GO:0005515
Trre2g00721 875 Pfam Ankyrin repeats (3 copies) 532 591 IPR002110 GO:0005515
Trre2g00721 875 ProSiteProfiles KHA domain profile. 812 875 IPR021789 -
Trre2g00721 875 FunFam Potassium channel KAT3 64 301 - -
Trre2g00721 875 SMART cnmp_10 379 496 IPR000595 -
Trre2g00721 875 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Trre2g00721 875 SUPERFAMILY Ankyrin repeat 506 714 IPR036770 -
Trre2g00721 875 CDD CAP_ED 379 492 IPR000595 -
Trre2g00721 875 Gene3D Helix hairpin bin 301 367 - -
Trre2g00721 875 Pfam Ion transport protein 64 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre2g00721 875 SUPERFAMILY cAMP-binding domain-like 304 498 IPR018490 -
Trre2g00721 875 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Trre2g00721 875 SMART ANK_2a 658 687 IPR002110 GO:0005515
Trre2g00721 875 SMART ANK_2a 526 555 IPR002110 GO:0005515
Trre2g00721 875 SMART ANK_2a 560 589 IPR002110 GO:0005515
Trre2g00721 875 SMART ANK_2a 593 622 IPR002110 GO:0005515
Trre2g00721 875 FunFam Potassium channel KAT2 368 503 - -
Trre2g00721 875 ProSiteProfiles cAMP/cGMP binding motif profile. 379 498 IPR000595 -
Trre2g00721 875 Gene3D - 62 300 - -
Trre2g00721 875 ProSiteProfiles Ankyrin repeat profile. 658 690 IPR002110 GO:0005515
Trre2g00721 875 SUPERFAMILY Voltage-gated potassium channels 58 300 - -
Trre2g00721 875 Gene3D Jelly Rolls 368 499 IPR014710 -
Trre2g00721 875 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Trre2g00721 875 Gene3D - 527 713 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00721 Trre-Chr2 5696263 5701299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00721 12 874 Ion Channels AT2G25600 51.432 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00721 K21867 - gmx:100809960 1040.02