Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00717 ATGGATTCTCCAGAACCTTCTAAGATCAACAACAACAACAATTCTTCTTCTTCTTCTTCTTCTCTCTCCACTCTCAATCCCGCCGCTGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTATCTCCAATAAAGCCCGTCAAGGCTTCTCATGCGACACATGGGTTTCTCGGACTCAATTCTCCACCTCTTGTATTCAAGTCGCCGCGTATTAGTGATCACCACCGTGAAACACAATACTTGGAAAGGCCTCAAGGTACCCATTTGTCCAGTGGAGAAATATCTCAAACTGACATCGGAGAAAACAGTCTCGGTGAAGCTCGTGGTGATTTGAAGAAATTGACTTCTCAGCAGTCATTGCCAGAGGGGTTTATAATAGATGCTCAGAAGGAATTTGGCGTAAAAAATGATGCAAATAACCAAAGCTGTAGTCCTCCACAATCTGTTGAGGAATATTTGGCTGATCCCGGGGATGATCAATTGTTTCCAGTCAACCCAGAAACGGAACAATCCACCGATGCAGTTGGGTCATCCTTAACTGAGTCAGAGAGAGTTATATTAAAATTTGATGGGAGTGATGGTCCTAGTAACAGAGCAGAAGAACTTTTGCCTCTGTTAGAGGAATCTAATATGGTTCATCCAGAAAGGCTAGCATATGTTGAAAATCCTTCAATAGTAGAAGGGGAGAAAAATGGGGCTGAATTGGTTCCTCAAGAGCACATAAACGTAGGCTCGGGTTCAGGTGCAAATGCTTTTGATAAACAATATTGCCATGATTCACTTCCCCAGGATGTTAAAGAATTCGAAAATTCCAATGAGATGGTGTCAACCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGCTCTGAGGCTAGTCTAAAGTATCATGGCTTCCGTAGACGCTGCCTACAATTTGATGAAGCTGCTTCCATTGTCCTTGGAAGTAACAAGTCTCATGTGAAAATGAATGCAACTTCAAGCAACATGAAAATGGTTCCTCTGGCAGGTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCACCTAGTCGTGCTTCAACTTCAGTTGTGAGATTATCAGATGGTTTACAGGGGATACAATCCAAACCTTCTATAAGTCTGCATAAAGTGGAAAGTGTGACAAGATCCTCAGTTCCGTCCAATGTGGATGGTCAATCGTTTATTGCTAGAAATGAGAGCCGTGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGAAAGAATCCATCGACCTATATCCGGCAAATACACATGATAAGAAGAGAGTTAGCCCTGCAGAAGTTGAAATTATCGAGGAATCAAACCATCGTAGCACCTCCAAGAAAAAGAAGAAAACAAGTGCTGATGATACCAGTGGCCCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGTAATAGAATAGAGTTTCAGGAGACAGTTGTTGAGACAAAGCATCATATCGAATCTCGTAATCCACAGGCATTTGCTCCCAAAATTGTACTGTGTGCGGCCGATGTTCCACCAAATAATATGGAAGATGTGAATATGACAACACCGGCATCGGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGCACTAAAAAATATTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGAGTGGATGTCGATGTGATGGATGTATGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCAAGCAAAGAGAGGGAGAGCAGCGTTGTTGAAGAAGGGTTGGATAATACACTTCACAATAAACAGAAAATGGTGACAATCAGGACAGGCTTGTTTCGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTTGAATGCTCTGACCAAGGCACGCAGGCTGTGAAGTCCATAGTTGCTTCTGCAAGTTGGACTAAATCTTCCAAAAAATCGCGGAGCAGTCTCGCACATTCGGAGTCGAATAATTCTCAAAAGAATGCACCTACAGGTCCTTCATCTAAAGATAATGAGTGGTTAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAATTATCGGGGGGTTCTATTCGTTGGCGCGGTAGTTCACCAATTACCCCAAATGCTTCCAAAGATGATGAATCAGACGGCAAGCTATTTGACATTCTAGAAGATGAAACACCTGAAGTATTGAAAGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCGATCCAAAAGAGAGTTTCTCCTCCACAGAATCATCTACTTCGGATAGGAACAAGCTCCTCCGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCTCCGTTGACCCCTTGTGCTGATTCCAAAGCTATTCGCACTGCAAATGAGGATTTGGGTAACAGCGCAGATAAAGTAACATAA 2550 0.4247 MDSPEPSKINNNNNSSSSSSSLSTLNPAAESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISDHHRETQYLERPQGTHLSSGEISQTDIGENSLGEARGDLKKLTSQQSLPEGFIIDAQKEFGVKNDANNQSCSPPQSVEEYLADPGDDQLFPVNPETEQSTDAVGSSLTESERVILKFDGSDGPSNRAEELLPLLEESNMVHPERLAYVENPSIVEGEKNGAELVPQEHINVGSGSGANAFDKQYCHDSLPQDVKEFENSNEMVSTSQVNSENIPQDGSEASLKYHGFRRRCLQFDEAASIVLGSNKSHVKMNATSSNMKMVPLAGSKPPGIGLHLNSIVNAMPPSRASTSVVRLSDGLQGIQSKPSISLHKVESVTRSSVPSNVDGQSFIARNESRETDASVVADSFISESPILKESIDLYPANTHDKKRVSPAEVEIIEESNHRSTSKKKKKTSADDTSGPKSCNCKKSKCLKLYCDCFGAGLFCGDDCACESCGNRIEFQETVVETKHHIESRNPQAFAPKIVLCAADVPPNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSSGCRCDGCMNAFGKREDFVAMEHASSKERESSVVEEGLDNTLHNKQKMVTIRTGLFRPANHLSPVTPLFECSDQGTQAVKSIVASASWTKSSKKSRSSLAHSESNNSQKNAPTGPSSKDNEWLDLPPYQLSNRCGIRQLSGGSIRWRGSSPITPNASKDDESDGKLFDILEDETPEVLKEASTPIKSVKANSPIQKRVSPPQNHLLRIGTSSSGGLKSGRKFILQSVPSFPPLTPCADSKAIRTANEDLGNSADKVT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00717 849 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 832 IPR044522 GO:0003700
Trre2g00717 849 SMART CXC_2 477 518 IPR033467 -
Trre2g00717 849 SMART CXC_2 565 606 IPR033467 -
Trre2g00717 849 MobiDBLite consensus disorder prediction 442 481 - -
Trre2g00717 849 MobiDBLite consensus disorder prediction 685 716 - -
Trre2g00717 849 MobiDBLite consensus disorder prediction 442 475 - -
Trre2g00717 849 MobiDBLite consensus disorder prediction 1 38 - -
Trre2g00717 849 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 480 515 IPR005172 -
Trre2g00717 849 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 568 603 IPR005172 -
Trre2g00717 849 ProSiteProfiles CRC domain profile. 478 605 IPR005172 -
Trre2g00717 849 MobiDBLite consensus disorder prediction 734 755 - -
Trre2g00717 849 MobiDBLite consensus disorder prediction 734 749 - -
Trre2g00717 849 MobiDBLite consensus disorder prediction 685 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00717 Trre-Chr2 5650057 5655479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00717 290 827 CPP Transcription Factor Family AT3G22780 32.369 1.14e-58 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre2g00717 TCR 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00717 K21776 - gmx:547664 761.525