Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00716 ATGGATTCTCCAGAACCTTCTAAGATCAACAACAACAACAATTCTTCTTCTTCTTCTTCTTCTCTCTCCACTCTCAATCCCGCCGCTGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTATCTCCAATAAAGCCCGTCAAGGCTTCTCATGCGACACATGGGTTTCTCGGACTCAATTCTCCACCTCTTGTATTCAAGTCGCCGCGTATTAGTGATCACCACCGTGAAACACAATACTTGGAAAGGCCTCAAGGTACCCATTTGTCCAGTGGAGAAATATCTCAAACTGACATCGGAGAAAACAGTCTCGGTGAAGCTCGTGGTGATTTGAAGAAATTGACTTCTCAGCAGTCATTGCCAGAGGGGTTTATAATAGATGCTCAGAAGGAATTTGGCGTAAAAAATGATGCAAATAACCAAAGCTGTAGTCCTCCACAATCTGTTGAGGAATATTTGGCTGATCCCGGGGATGATCAATTGTTTCCAGTCAACCCAGAAACGGAACAATCCACCGATGCAGTTGGGTCATCCTTAACTGAGTCAGAGAGAGTTATATTAAAATTTGATGGGAGTGATGGTCCTAGTAACAGAGCAGAAGAACTTTTGCCTCTGTTAGAGGAATCTAATATGGTTCATCCAGAAAGGCTAGCATATGTTGAAAATCCTTCAATAGTAGAAGGGGAGAAAAATGGGGCTGAATTGGTTCCTCAAGAGCACATAAACGTAGGCTCGGGTTCAGGTGCAAATGCTTTTGATAAACAATATTGCCATGATTCACTTCCCCAGTGTGCAGGAAATAATCAACAACATCATAGTGACTGTACACCTCAATTGATGCCTGATCCTATCCAGGATGTTAAAGAATTCGAAAATTCCAATGAGATGGTGTCAACCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGCTCTGAGGCTAGTCTAAAGTATCATGGCTTCCGTAGACGCTGCCTACAATTTGATGAAGCTGCTTCCATTGTCCTTGGAAGTAACAAGTCTCATGTGAAAATGAATGCAACTTCAAGCAACATGAAAATGGTTCCTCTGGCAGGTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCACCTAGTCGTGCTTCAACTTCAGTTGTGAGATTATCAGATGGTTTACAGGGGATACAATCCAAACCTTCTATAAGTCTGCATAAAGTGGAAAGTGTGACAAGATCCTCAGTTCCGTCCAATGTGGATGGTCAATCGTTTATTGCTAGAAATGAGAGCCGTGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGAAAGAATCCATCGACCTATATCCGGCAAATACACATGATAAGAAGAGAGTTAGCCCTGCAGAAGTTGAAATTATCGAGGAATCAAACCATCGTAGCACCTCCAAGAAAAAGAAGAAAACAAGTGCTGATGATACCAGTGGCCCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGTAATAGAATAGAGTTTCAGGAGACAGTTGTTGAGACAAAGCATCATATCGAATCTCGTAATCCACAGGCATTTGCTCCCAAAATTGTACTGTGTGCGGCCGATGTTCCACCAAATAATATGGAAGATGTGAATATGACAACACCGGCATCGGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGCACTAAAAAATATTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGAGTGGATGTCGATGTGATGGATGTATGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCAAGCAAAGAGAGGGAGAGCAGCGTTGTTGAAGAAGGGTTGGATAATACACTTCACAATAAACAGAAAATGGTGACAATCAGGACAGGCTTGTTTCGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTTGAATGCTCTGACCAAGGCACGCAGGCTGTGAAGTCCATAGTTGCTTCTGCAAGTTGGACTAAATCTTCCAAAAAATCGCGGAGCAGTCTCGCACATTCGGAGTCGAATAATTCTCAAAAGAATGCACCTACAGGTCCTTCATCTAAAGATAATGAGTGGTTAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAATTATCGGGGGGTTCTATTCGTTGGCGCGGTAGTTCACCAATTACCCCAAATGCTTCCAAAGATGATGAATCAGACGGCAAGCTATTTGACATTCTAGAAGATGAAACACCTGAAGTATTGAAAGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCGATCCAAAAGAGAGTTTCTCCTCCACAGAATCATCTACTTCGGATAGGAACAAGCTCCTCCGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCTCCGTTGACCCCTTGTGCTGATTCCAAAGCTATTCGCACTGCAAATGAGGATTTGGGTAACAGCGCAGATAAAGTAACATAA 2616 0.4243 MDSPEPSKINNNNNSSSSSSSLSTLNPAAESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISDHHRETQYLERPQGTHLSSGEISQTDIGENSLGEARGDLKKLTSQQSLPEGFIIDAQKEFGVKNDANNQSCSPPQSVEEYLADPGDDQLFPVNPETEQSTDAVGSSLTESERVILKFDGSDGPSNRAEELLPLLEESNMVHPERLAYVENPSIVEGEKNGAELVPQEHINVGSGSGANAFDKQYCHDSLPQCAGNNQQHHSDCTPQLMPDPIQDVKEFENSNEMVSTSQVNSENIPQDGSEASLKYHGFRRRCLQFDEAASIVLGSNKSHVKMNATSSNMKMVPLAGSKPPGIGLHLNSIVNAMPPSRASTSVVRLSDGLQGIQSKPSISLHKVESVTRSSVPSNVDGQSFIARNESRETDASVVADSFISESPILKESIDLYPANTHDKKRVSPAEVEIIEESNHRSTSKKKKKTSADDTSGPKSCNCKKSKCLKLYCDCFGAGLFCGDDCACESCGNRIEFQETVVETKHHIESRNPQAFAPKIVLCAADVPPNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSSGCRCDGCMNAFGKREDFVAMEHASSKERESSVVEEGLDNTLHNKQKMVTIRTGLFRPANHLSPVTPLFECSDQGTQAVKSIVASASWTKSSKKSRSSLAHSESNNSQKNAPTGPSSKDNEWLDLPPYQLSNRCGIRQLSGGSIRWRGSSPITPNASKDDESDGKLFDILEDETPEVLKEASTPIKSVKANSPIQKRVSPPQNHLLRIGTSSSGGLKSGRKFILQSVPSFPPLTPCADSKAIRTANEDLGNSADKVT 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00716 871 MobiDBLite consensus disorder prediction 464 503 - -
Trre2g00716 871 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 854 IPR044522 GO:0003700
Trre2g00716 871 MobiDBLite consensus disorder prediction 1 38 - -
Trre2g00716 871 MobiDBLite consensus disorder prediction 707 738 - -
Trre2g00716 871 MobiDBLite consensus disorder prediction 464 497 - -
Trre2g00716 871 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 502 537 IPR005172 -
Trre2g00716 871 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 590 625 IPR005172 -
Trre2g00716 871 ProSiteProfiles CRC domain profile. 500 627 IPR005172 -
Trre2g00716 871 SMART CXC_2 587 628 IPR033467 -
Trre2g00716 871 SMART CXC_2 499 540 IPR033467 -
Trre2g00716 871 MobiDBLite consensus disorder prediction 756 771 - -
Trre2g00716 871 MobiDBLite consensus disorder prediction 756 777 - -
Trre2g00716 871 MobiDBLite consensus disorder prediction 707 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00716 Trre-Chr2 5650057 5655479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00716 312 849 CPP Transcription Factor Family AT3G22780 32.369 2.10e-58 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre2g00716 TCR 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00716 K21776 - gmx:547664 748.814