Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00708 ATGATACTTGTGAGAGGAGTTAGACAACGCCAGTGGGGCTCTTGGGTATCAGAAATTCGTCACCCTTTATTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCAGCAGCCAGAGCATATGATGAAGCAGCCATTTTAATGAATGGAAAAAATGCCAAAACAAATTTCCCTATAGCAAAAGATATTCAAACACAAGATGCTAATTCCATAACACCAAATTGTTATGATAATAATAACTCTTTCCTCTCTTCAAATACTCTTTCTGATATTCTCAACAAAAAACTTAGAAAGTGTTGCAAAAAACAATCTCCATCACTCACTTGTTTGAGACTTGACACTGACAATTCTCACATAGGAGTTTGGCAAAAAGGAGCAGGATCACATTCTGATTCTAATTGGATCATAAGGGTTGAGCTTGGAAAGAAATTACATGAAGAGGGTCATGTTGAATCAAATTATGTGACATCATTAGCGGAATCAGCACCTAATAATTGTACTATTGATGATCATGCTGAGAAAAATGGGATAGATCATGAAGAAGATATTGTTACCATGCAGATGATTGAAGAACTACTTAATTGA 591 0.3638 MILVRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMNGKNAKTNFPIAKDIQTQDANSITPNCYDNNNSFLSSNTLSDILNKKLRKCCKKQSPSLTCLRLDTDNSHIGVWQKGAGSHSDSNWIIRVELGKKLHEEGHVESNYVTSLAESAPNNCTIDDHAEKNGIDHEEDIVTMQMIEELLN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00708 196 Gene3D AP2/ERF domain 5 62 IPR036955 GO:0003700|GO:0006355
Trre2g00708 196 CDD AP2 5 62 IPR001471 GO:0003700|GO:0006355
Trre2g00708 196 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
Trre2g00708 196 Pfam AP2 domain 4 52 IPR001471 GO:0003700|GO:0006355
Trre2g00708 196 FunFam Ethylene-responsive transcription factor 2 3 61 - -
Trre2g00708 196 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
Trre2g00708 196 SUPERFAMILY DNA-binding domain 4 61 IPR016177 GO:0003677
Trre2g00708 196 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Trre2g00708 196 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700|GO:0006355
Trre2g00708 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00708 Trre-Chr2 5597966 5601479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00708 4 196 AP2-EREBP Transcription Factor Family AT5G25390 55.385 2.25e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g00708 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00708 - - gmx:100784305 228.024