Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00687 ATGGGAAAACCAGCTGGAAAAAAGAAGGAACATCATGAATCACCAAAAACAAAGAACAACAACAAAGGTGGTGGTTACGAACGTTCATCATCATCAAAAGCATTAGACGATGATACTGCGATGTTTATCAACATGTCACAAGAGTTAAGAGAAGAAGGTAACAAACTTTTTTACCAGAAAAAAGACAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTTAAACTTCTTCCTAAAAATCACATAGATGTTGCACATCTTCATACAAATATGGCTATGTGTTATATGCAATTGGGTCTTGGTGAGTATCCTAGAGCAATCAATGAGTGCAATCTTGCTTTGCAGGTTTCGCCGAGGTATAGTAAAGCTCTTTTAAAAAGAGCTAAGTGTTATGAATCGTTGAATCGGTTAGATTTGGCTATGAGAGATGTTAGGGTTGTTTTGAATGCTGAACCGAATAATTTGACCGCGTTGGAGATTCTTGATAGTTTGAGGAATACTATGGATGAGAAAGGGATTACGATCGATGAGACTGAGATTGCTTTGGCTGCTTTGCAGCAGGTTGAGCCGCCTGCTGCGAGGTTTAGGAAAGTTGTTAGGGAGAAGATTACTAAGAAGAAGAAAGGGCATAAAGGGGAAGGTGAGGAAGAGCGGAAAAGTAAGAATGTTGGTGTTGAGAAGAATAACAGTGTTGGGAATGTCAAGGTGAAGGGTAAAGATTCTAAGGATAAGGTTGTTGTTGATAAGGATAAGGATAGTAGAGATGTTGTTACGAAAGATAAAGCGGTTACTAGGACTGTGAAGTTGATTTACGGTGAGGATATTAGGTGGGCGCAGTTGCCTGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAAGTATCCGGGGTTAAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACCACTACTGCTGAGTTGAGGTTAGCTGAGGGTTGTCATGTGCTTGGTTCGATTCGGTTGTATATTACGCAGGTGGATTTGGATAAGGAGCCACGTTATGATGAAAAGCCGAGTAGTGGTGAGGTGAGAAGGGAGAATGGGGTTGGAGAAGGAGACAGGAGTAATAGGATGCTTACTGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGTTATATTCGGAGGCGATGGAGGATGCGGTGACGAGTGATGGTGCTCAAGAGCTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAGGCGAGGAGGCAAGTGCCTTGTCAGGAGGAAGGGTCGAGAGATGCTTCTTTCGAGCATGTTAAAGCTGCGTATGAGTGGGCTAAGAAGGAGTACAAGGAAGCGGAAATGAGATACGAAGAATCTGTGAAAATCAAACCAGACTTTTATGAGGGACTCCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGTGTTATTTAATTGCTAACAATAAGGAATTCGAAGTTGGTCCTTTTGAGGAGGTTCTACAGCTCTATAACAAGGCAGAGGACGGGATGGAGAAAGGGATGTTGATGTGGGAGGAGCTTGAGGAACAGCGCTTGAATGGACTATCTAAATTAGATAAATATAATGCACAGTTAGAGAAAATGGGTTTGCACGGTCTTTTCAGGGATGTTTCTTCCGAGGAAGCTGAAGAGCAGACTTCAAAGATGAGGATACAGATATATCTTTTGTGGGGTACCTTATTGTACGAGCGTTCTGTTGTGGAGTTTAAGCTAGGACTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTACAACTGACATTGGTGTTATGATAAAGAACCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACTTTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCATTACATCTTGGAGCAATTTTAA 2127 0.4194 MGKPAGKKKEHHESPKTKNNNKGGGYERSSSSKALDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYESLNRLDLAMRDVRVVLNAEPNNLTALEILDSLRNTMDEKGITIDETEIALAALQQVEPPAARFRKVVREKITKKKKGHKGEGEEERKSKNVGVEKNNSVGNVKVKGKDSKDKVVVDKDKDSRDVVTKDKAVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDKYPGLKGVLVKYKDREGDLVTITTTAELRLAEGCHVLGSIRLYITQVDLDKEPRYDEKPSSGEVRRENGVGEGDRSNRMLTVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTSDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRQVPCQEEGSRDASFEHVKAAYEWAKKEYKEAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWCYLIANNKEFEVGPFEEVLQLYNKAEDGMEKGMLMWEELEEQRLNGLSKLDKYNAQLEKMGLHGLFRDVSSEEAEEQTSKMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLHYILEQF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00687 708 SUPERFAMILY CAD & PB1 domains 263 347 - -
Trre2g00687 708 MobiDBLite consensus disorder prediction 348 367 - -
Trre2g00687 708 Gene3D - 256 341 - -
Trre2g00687 708 Gene3D Tetratricopeptide repeat domain 44 172 IPR011990 GO:0005515
Trre2g00687 708 MobiDBLite consensus disorder prediction 203 236 - -
Trre2g00687 708 MobiDBLite consensus disorder prediction 208 224 - -
Trre2g00687 708 MobiDBLite consensus disorder prediction 1 33 - -
Trre2g00687 708 PANTHER PROTEIN CLMP1 1 706 IPR044517 -
Trre2g00687 708 SMART PB1_new 264 342 IPR000270 GO:0005515
Trre2g00687 708 Pfam PB1 domain 264 340 IPR000270 GO:0005515
Trre2g00687 708 SUPERFAMILY TPR-like 45 163 IPR011990 GO:0005515
Trre2g00687 708 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g00687 708 CDD PB1 266 339 - -
Trre2g00687 708 SMART tpr_5 121 154 IPR019734 GO:0005515
Trre2g00687 708 SMART tpr_5 467 500 IPR019734 GO:0005515
Trre2g00687 708 SMART tpr_5 85 120 IPR019734 GO:0005515
Trre2g00687 708 SMART tpr_5 46 80 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00687 Trre-Chr2 5426176 5428406 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00687 36 154 Calmodulin-binding Proteins AT3G25230 31.250 8.65e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00687 K26538 - mnt:112092242 889.412