Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00679 ATGAAGACAGGAAAGCTAATTAATCATAACTTACAAAACTTGTCGGACACTTTTCCTGATATTTCTTCTGGGGCAATGGTTGGTACTAGTAGTGGTAGTAATATTGTATTTCATGATATTCAGAGCAATAATACTGCTTCTTGGCCAACATTTCCTGGTGGTGAGAGGGCAAGGGAGTCTTATTCTTATAGAGGGCAATCCTGTGTTACAATCCCTGCCTCTGGTCTAAATTTTTGCACCCCAAATATGCAACCGACATCAAGAACGGCTTTTGAATGGTTTTCAGCTAACTATGCAACTCCTTCTGTGAGTGGGGGTCCTCGTGTCTTCTGCATGGGAAAAAGTGGCCATCTTCTTATAAGCAATACAGGGCTTCTTGGCATCGTTTGCTCATGTCATTGTTGCCACATGTCTATACTTAAGTTTTGTGAGCATTCAGGGTTACACAGTGCCAACCCAGGGGATGCTGTTCGTATGGAAAGCGGAGAGACCATTGCACAGTGGCAGAAGTTGTATTTCTTAAAATTTGGGATTAGGTCTTCGGAAAATGAGAGTGAATGGGACTGGCCAGAAGTATTTTCAACAACAGGCAATCTGATGAAATCCAATGCATCTGATATGTCCAAGAGTGATCTGTCACATAATTTGAATTCCGCTGCAGTCACATTAAGAAAACAACCGATGCCAAACCAGGATGGTTGCAACATTCCACTCAAGGGTTTAAACGCTTTTATGCAGAACAACCTGTATGATCGGGTGAAAAGCCAGTTAATGGAATCTAATATGGCTATTTTTACACCTTCACCAAACTTTGTTGGAGTTCAATTGAATGATGGTTGTCAGCCTATACCTCCTTTCCTTGATTCTTTGAAAAGGGATGAAAATTTGTCAATTACCCAGTCTGCACAAATTCCAACAAGCCATAAAGACCATGCATGTATCAAAAAGAAGAATGTAGAGACTGGTATACTAGACAAAGATGCAACTTCCTCTAACATCGAGCTTAGGCTTGGTCAACCACATCAGGCAGGAAATCCAGTTGCATCATTTGTAGAATCACCATTGTTTACCTTTGCTAGTTCTCCAAAACTGCATTTCCTGAAGCAGATGACTAATAATCTTAGCAGGGAGGAGAAAATGCAGAATAATTTTAGTCATGCTGCCGGTTCATCCAAAATGCTTGAGGAACAACCTCTACTTAACCCCCAATACTATATGCCTGGATGTAGTAATATTTCAAATGCTGTCACAGCTAGTTCACAAACTGACAATGTGGCCACGAGTTCATTGTTTTTACCATTTCCACAATTTACTTCTCAACACAAGGGTAATACAAATGCAAGTGGAAATTTGGTGAATGATGGTAGCATGCCCAAGAACTTGCATTCTGAATATGGTACCGCACAATTTGGTTCTTCTAATGTTCTCTTGAATAGTAATGGTCAGAAAGGAAGGCAATCAAATGATTCTGCACCAGAATTCAATAAATATTTGGACAATGATAATGGTGCAAGGGTTGGTGAAGATTCCTGCACCAAAATAAATTCTGGATTTGAAGTAAATCAGTTCATGGAATTTGGCTCCATCAGAAGAACTGTTGGCGGTAGTGGTAGTTGTACTCCTATTGTTAACGGAAAGATATATGAATCAAGCTTTGCATCAGATACATCTGTGGGTGCAAATGCTTTGCAAGGTTCAAAAAATGTATTTTCTTTTGGACGAAGCAATCACTTGACTTTGGGGACAGCTGTTCCATTTGAAGGAAATTTGACGAGCCTTCCCTATCTTGTTTCAAGCTCTACATCAAATCAGAATTCTACACTGAAACAACGGGGTGTTAATATGGATACTTACATGCTTGATGAAAATATGAGGTTGCTTGCATTGACACAGATGCTGGAGTTATCTAAGCAACAACAAGCTTTGTATTTTCATGATATGAATCAGAAACTAGGGAAATCAAATATTTCAAAACCTCAGAACTATATATACAAGGCTTCAGTACCTGAGCCGGGTTCTTCTGGTGCATCACTGAAATTGGCCCAAAATAGGGGGACTTGTGGAAATCTTGAGATTACTGATGGTTTGAACAGCTATTGTGATGTCTCTGCCTTAATACCAATACCTTTACAATCCAAAGAAAAGGAATCACAATGTAAACATTCCTATGATCTTCAAAATGATGGTCCGTCTTTGAGCCTTGGAATGAACAATACCAGATCAAGTGAAAAATGCTCTGAGCAACAATCAGATCTACATTTTGCAGGCATATATGCTAGTGCTGCTTGGGAAAACTGTTCCAGAAACAATGTTTGCACTGGAATTGAACCCTCTCGCGATATTCTAAAAGAAAAGTTTGCAGATGCCAATGGTGTGACCTTTTTGAAGATAGCTTCAGAGTGTAGGAGAGATCAGAAGGCTTCAAAGAATAAAAATATCTACTTTGAGCTAAGTGGATTAGATGGTCGCAATACAGTAAAAACTGGCTCCCATACACCTCAATGGAGAGATGTGCCAAGTAGGTTCAGGAAACCATTATGTGATGCAACAATTTTAGATCAGATGGCCACTGTATTGGATAGGGAAGGAGAAGACAGTGTCCAAGTGGGAAACATTTCCACCAAACGTTTGAAAAAAATTATTGATAGGGAAGATTTGTTGAAAGAGCGGGGAAATTTTAATGTTTCTTCTGGATGTTCTGCTCCTGTTGTTTCTCAAGCCTCGGGGATGGAGGTGAACATGGTTGATTCTTGTAATGTAGATACTACATATGCTGGTTGTATTGAGAACCTTGTGCTTGATGAGGGGTCAGGAATTGATAAAGGCTGGTCCTCTGATTTGGTTGAAAGTGAAAGAAGTGCAGAGTATGCAGGCTCAACCAGTGGGTGTGACTTGAAAAAAGGTTATATGAGAGTCTTAAATGATCAACCATGCCGGAGTCTCCTTGACGATATTAAACTGTTAGATTCTTTGATTTGGAAGAAAGGGCAGGACCAAAATCATATAATGCTTAGTGTTAATTGTAGAGCCAGTGAATCTCAACAAGGCAAGAAGGGCTTCAAAGGAAAAGAGCGAAAGAGAAACAAGGCGAGAGTTCTAGGTGCTTCATTGCTTCCTGGAATCTCTTGCTCATTGGATAACCAGATTGGAGAAAGTCCTGGAGCTTTTGATCCCCCTTCTAGTTTATCTGAAGAAATGCGATTGTACTTTTCATCTACCCAACAAAGATCATCTACCAAGGTTTCTATTGTTCAACCTATAACTAGTCACGGACCCTCTTCATTGTCATCTAAATTTTGCTCTTGTAATAATAATAATCCAAACAAACATCACAGAGATGAAGATAGCTGCGAGTCAGAATCAAATTCTCATGCCGAGTTTCACACATTACCTGGAATTTCTAGAATAAAGAAATCAAGGAAGGTTTTCACTTCTGATTGCTTTGGGAATTTCCAAACGGAAGTACCATACTATGATGAACCAAAAAATGCTACGCAGGTGTTATCCTCTAGCAGAAAAGGAAGCGCTCATAGAATCAAAAGGCCAGTAGTGTGTGGAAAATATGGGGAAATATCTAGTGAATTATCAATTACAGAAGTACCAAAACCAGCAAAAATTGTCCCTCTTAGCAAGGTTCTTAGAAATTCCAAAAGATGTATGATCCCTACAACTGAAACACCTGGTCTAACAGCAAAAAGAAAAAGGAGGACATTGGGCCTTGGAACAAGTTGGGGGCATAGCTGTGCGAAATCTGGTTTAAAAGCTAAGAAAGATAATGAATCCGAATATACAATAATTTGCGATGAAACAAATTCCGACGTGTCTATGGAGGGTTTTGAGAGAGCCCACAAGCAAACTGTTGTTTACAAAGGGAAGAGAGATACCAAAGAAGGGCAGGGTGATATTTTAAGCAGAGCTGATTCTTCATTGAAGGTGAAGAGCAGAGAAATACAGAAACAGCGCAGCATTAACGAAATCATTACTGAAGAAACCCAAATGCAGGATATGTTGAAGTATGCAGAAGATCATCAGCTTAGTTTGTGTAACAAAAGAAGTAACATCTCAGTTCAGGAACACACAAATCTGTCCATCACCAATTCAGATTCCTTCTGCGGTGTCTGTCAAAGGTCAAGCAATGACGAAGCTAACATTTTATTGGAGTGTAGTAAATGTCTAATTAAAGTTCGTCATGCTTGCTATGGTATTTCAGCATTACCTAAAAGAGGTCAAAGGTGTTGTAGACCGTGCCAAATAAACTCAAAAGATATTAGCCCGTTGCAAATCGAAACTGATGGAATTAATGATGAGAAAGTTTTTTTTTATCGAAGATCTGTGCTTCATGGTATTGGCCCTGAATGTCAGTCTACATATGATTCTACTGATGAGATGGGCAGTCGAGAGGAATTCACCTGTGCTAGGACAGAGGGTTACAAGGGCCGTAAATGCGATGGTATCCAGAATAAGCATAGCAGTGCCTTAAAACTCCAGGGCAGATGCCGTGTTCCGGATGAGCAGTTAAATGCTTGGATTCACATAAACGGGAAGAAATTGAGCTCAAAAGGAATTCCAAAATTTCCAGATTCAGATATTGAGCGTGATTCTCGGAAAACATGTGCTCAGTACAAACAAGTGAAGGGTCTTTTTGTATACAAATCTGGGATACATGGCCTCGGTCTTTATACTTCTCAAGTAATATCTCAGGGTAGAATGGTTGTAGAGTATGTCGGTGAAATTGTGAGACAAAGTGTGGCTGATAAAAGAGAAATTGAATACATATCTGGAAGGAAACTTCAGTACAAAAGTGCCTGCTACTTATTTAGGATAGACAATGAACATGTAATTGATGCCACAAGGAAGGGGGGGATTGCTCGATTTGTTAACCACTCATGTCTGCCAAATTGTGTGTCGAAAGTGATTACTGTAAGGCATCTGAAGAAGGTTGTCTTCTTTGCAAAGAGGGACATACTTCCTGGTGAAGAGATTACTTATGATTACAAATTTAACTATGAAGATGAAGGAAAGAAAATTCCATGTTCCTGCAACGCAAAAACTTGCAGGCGCTCTCTGAACTGA 5073 0.3962 MKTGKLINHNLQNLSDTFPDISSGAMVGTSSGSNIVFHDIQSNNTASWPTFPGGERARESYSYRGQSCVTIPASGLNFCTPNMQPTSRTAFEWFSANYATPSVSGGPRVFCMGKSGHLLISNTGLLGIVCSCHCCHMSILKFCEHSGLHSANPGDAVRMESGETIAQWQKLYFLKFGIRSSENESEWDWPEVFSTTGNLMKSNASDMSKSDLSHNLNSAAVTLRKQPMPNQDGCNIPLKGLNAFMQNNLYDRVKSQLMESNMAIFTPSPNFVGVQLNDGCQPIPPFLDSLKRDENLSITQSAQIPTSHKDHACIKKKNVETGILDKDATSSNIELRLGQPHQAGNPVASFVESPLFTFASSPKLHFLKQMTNNLSREEKMQNNFSHAAGSSKMLEEQPLLNPQYYMPGCSNISNAVTASSQTDNVATSSLFLPFPQFTSQHKGNTNASGNLVNDGSMPKNLHSEYGTAQFGSSNVLLNSNGQKGRQSNDSAPEFNKYLDNDNGARVGEDSCTKINSGFEVNQFMEFGSIRRTVGGSGSCTPIVNGKIYESSFASDTSVGANALQGSKNVFSFGRSNHLTLGTAVPFEGNLTSLPYLVSSSTSNQNSTLKQRGVNMDTYMLDENMRLLALTQMLELSKQQQALYFHDMNQKLGKSNISKPQNYIYKASVPEPGSSGASLKLAQNRGTCGNLEITDGLNSYCDVSALIPIPLQSKEKESQCKHSYDLQNDGPSLSLGMNNTRSSEKCSEQQSDLHFAGIYASAAWENCSRNNVCTGIEPSRDILKEKFADANGVTFLKIASECRRDQKASKNKNIYFELSGLDGRNTVKTGSHTPQWRDVPSRFRKPLCDATILDQMATVLDREGEDSVQVGNISTKRLKKIIDREDLLKERGNFNVSSGCSAPVVSQASGMEVNMVDSCNVDTTYAGCIENLVLDEGSGIDKGWSSDLVESERSAEYAGSTSGCDLKKGYMRVLNDQPCRSLLDDIKLLDSLIWKKGQDQNHIMLSVNCRASESQQGKKGFKGKERKRNKARVLGASLLPGISCSLDNQIGESPGAFDPPSSLSEEMRLYFSSTQQRSSTKVSIVQPITSHGPSSLSSKFCSCNNNNPNKHHRDEDSCESESNSHAEFHTLPGISRIKKSRKVFTSDCFGNFQTEVPYYDEPKNATQVLSSSRKGSAHRIKRPVVCGKYGEISSELSITEVPKPAKIVPLSKVLRNSKRCMIPTTETPGLTAKRKRRTLGLGTSWGHSCAKSGLKAKKDNESEYTIICDETNSDVSMEGFERAHKQTVVYKGKRDTKEGQGDILSRADSSLKVKSREIQKQRSINEIITEETQMQDMLKYAEDHQLSLCNKRSNISVQEHTNLSITNSDSFCGVCQRSSNDEANILLECSKCLIKVRHACYGISALPKRGQRCCRPCQINSKDISPLQIETDGINDEKVFFYRRSVLHGIGPECQSTYDSTDEMGSREEFTCARTEGYKGRKCDGIQNKHSSALKLQGRCRVPDEQLNAWIHINGKKLSSKGIPKFPDSDIERDSRKTCAQYKQVKGLFVYKSGIHGLGLYTSQVISQGRMVVEYVGEIVRQSVADKREIEYISGRKLQYKSACYLFRIDNEHVIDATRKGGIARFVNHSCLPNCVSKVITVRHLKKVVFFAKRDILPGEEITYDYKFNYEDEGKKIPCSCNAKTCRRSLN 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00679 1690 CDD SET_SETD1-like 1539 1686 - -
Trre2g00679 1690 Pfam SET domain 1556 1665 IPR001214 GO:0005515
Trre2g00679 1690 Gene3D SET domain 1452 1690 IPR046341 -
Trre2g00679 1690 ProSiteProfiles SET domain profile. 1545 1666 IPR001214 GO:0005515
Trre2g00679 1690 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 369 1434 - -
Trre2g00679 1690 Pfam Tify domain binding domain 125 171 IPR032308 -
Trre2g00679 1690 SUPERFAMILY FYVE/PHD zinc finger 1365 1419 IPR011011 -
Trre2g00679 1690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1355 1422 IPR013083 -
Trre2g00679 1690 SMART set_7 1545 1672 IPR001214 GO:0005515
Trre2g00679 1690 SUPERFAMILY SET domain 1537 1686 IPR046341 -
Trre2g00679 1690 ProSiteProfiles Post-SET domain profile. 1674 1690 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00679 Trre-Chr2 5395146 5407700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00679 1547 1686 C2H2 Transcription Factor Family AT2G23740 33.962 1.71e-16 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g00679 SET 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00679 - - tpra:123915468 2959.86