Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00676 ATGGCTTACCATAATCAGCATCTTTCACAAGAACTACCACCAATCCACCATTTCACAGACCAAACCAATAACAACAACAACACGTTCCGTTCCATATTACCAGAAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAACCAACTCCACACCACACCTAATTGGCTCAACAACGCTCTCCTTCGCACCCACTACACCGACAACAACAACAATAACGACGTTAACAACGACGACACCAACGTTAACGGAAACGGTAACGATGCTTCTAATTTTCTTAATCTCCAAACGGCTACCGACTCCGCCGCTGTTCAAACCACCGGTCAATGGCTTTCACGGTCGATTCTCCACCGCCACCACGGTGAAGTCATCGACGATGTTTCCGCCGCCGTTGCCGGCGGGGAGTCAGTACACGAATTAGGCGATTTAAAAGGCGAACATCTCGGCGGGAAGGGGGAGACGGTGGTCGGAGACGGAGGAGGAGGATTAGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATTATGGCGCATCCGTTGTATGAACAGTTGTTGTCGGCACACGTGGCGTGTTTGAGGATTGCAACTCCGGTGGACCAGTTACCGAGAATTGATGCTCAGTTGGCACAGTCTCAGAATGTGGTCGCAAAGTATTCGGCGTTTGGACAGAACATCGTCGGAGTAGATGACAAAGAACTTGACCACTTCATGTCACACTATGTATTATTGCTGTGTTCTTTCAAAGAACAATTGCAACAACATGTTCGTGTTCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACGGGGGCAACAATGTCCGAAGACGAAGAAGAACAAGTAGACAGTGATGCAAATATATTTGATGGTAGTTTCGATGGCGGTGCAGATAACATGGGATTTGGTCCTCTTGTACCAACAGAGAATGAAAGATCCTTAATGGAGCGCGTAAGACAAGAGTTAAAGCATGAATTGAAACATGGTTATAAGGAGAAAATTGTCGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACTACATCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAATGGCCTTATCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTTTGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAAGTTCAACTGTCTTAAAGAGCAAGCGCAAAAGGTCTCAAAATTAG 1314 0.4635 MAYHNQHLSQELPPIHHFTDQTNNNNNTFRSILPEDSPDPNSKPDSDPNQLHTTPNWLNNALLRTHYTDNNNNNDVNNDDTNVNGNGNDASNFLNLQTATDSAAVQTTGQWLSRSILHRHHGEVIDDVSAAVAGGESVHELGDLKGEHLGGKGETVVGDGGGGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQNIVGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEEEQVDSDANIFDGSFDGGADNMGFGPLVPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRSQN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00676 437 MobiDBLite consensus disorder prediction 15 35 - -
Trre2g00676 437 MobiDBLite consensus disorder prediction 414 437 - -
Trre2g00676 437 Pfam ELK domain 337 358 IPR005539 GO:0003677
Trre2g00676 437 Pfam KNOX2 domain 230 278 IPR005541 GO:0003677|GO:0005634
Trre2g00676 437 SMART ELK_2 337 358 IPR005539 GO:0003677
Trre2g00676 437 Pfam KNOX1 domain 173 213 IPR005540 GO:0003677|GO:0005634
Trre2g00676 437 SUPERFAMILY Homeodomain-like 359 423 IPR009057 -
Trre2g00676 437 ProSiteProfiles 'Homeobox' domain profile. 357 420 IPR001356 GO:0003677
Trre2g00676 437 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 204 422 - -
Trre2g00676 437 MobiDBLite consensus disorder prediction 279 299 - -
Trre2g00676 437 FunFam homeobox protein knotted-1-like 3 isoform X1 358 419 - -
Trre2g00676 437 SMART KNOX1_2 170 214 IPR005540 GO:0003677|GO:0005634
Trre2g00676 437 ProSiteProfiles ELK domain profile. 337 357 IPR005539 GO:0003677
Trre2g00676 437 MobiDBLite consensus disorder prediction 1 88 - -
Trre2g00676 437 CDD homeodomain 360 421 IPR001356 GO:0003677
Trre2g00676 437 SMART HOX_1 359 424 IPR001356 GO:0003677
Trre2g00676 437 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Trre2g00676 437 MobiDBLite consensus disorder prediction 43 88 - -
Trre2g00676 437 Gene3D - 356 430 - -
Trre2g00676 437 SMART KNOX2_2 223 279 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00676 Trre-Chr2 5373097 5376223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00676 1 434 Homeobox Transcription Factor Family AT5G25220 65.854 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre2g00676 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00676 - - pvu:PHAVU_009G090500g 607.06