Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00664 ATGGAAAGACAAAGCAAAGAAAGTACTTCTCTAAGTCCAAGCACACCATTACAAAATCAACATGAAAAGAAGAAACAACAATCTATTGATCATGAAGAAGAGGAGATCACAAAGGTAGATACTTTATTATTTGATCTAAATGAATCTACCAATGAAGATTCTATTCTTGTTTGTAATAATAATATTCAACAAGAAATAGAACTCAATCTTATAACTTCTTTAGATGTTGGTAATTCATCATTAGAAAACAAAAACACTCTTGAGGTAGAACAAAGAGTTTTCTCTTGTAACTATTGTCATAGAAAATTCTATAGTTCACAAGCATTAGGAGGGCACCAAAATGCTCATAAAAGAGAGAGATCAATAGCAAAAAGAGGACAAAGATTTGGAACACAAATAATAACTTCATCTTCTAATTTTGGTTTTGGTTTTCCTATTATGCATAATAAACAAACCTATGCAAACATGGCTTCTTTGCCTCTTTATGGTGCTTTTGGTAATAAACCTTTTGGAATTCAAGCACACTCTATGATTCATAAGCCTTCTAATGGATTTGGAAACTCTTATGGACATCATCATCATCATGGTTGGTCAAACTCAAGAACATTTATGGATCAACAACCTGGAATAGCGAAACTAGGCGCGGAGAATTTTCATCGAGCGACAACATCGGCAGCAGCATTATCATCATCAAGAGGAAGTGTTGGTAGATTTGAAGTTGTGGATGCAATGATGAATTCTGCAGCTAATAAAGAAATGAAGCAAAAACATCTTGATTTATCCCTCAAGCTATGA 795 0.3346 MERQSKESTSLSPSTPLQNQHEKKKQQSIDHEEEEITKVDTLLFDLNESTNEDSILVCNNNIQQEIELNLITSLDVGNSSLENKNTLEVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIITSSSNFGFGFPIMHNKQTYANMASLPLYGAFGNKPFGIQAHSMIHKPSNGFGNSYGHHHHHGWSNSRTFMDQQPGIAKLGAENFHRATTSAAALSSSRGSVGRFEVVDAMMNSAANKEMKQKHLDLSLKL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00664 264 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Trre2g00664 264 SUPERFAMILY beta-beta-alpha zinc fingers 90 121 IPR036236 -
Trre2g00664 264 Gene3D Classic Zinc Finger 73 141 - -
Trre2g00664 264 MobiDBLite consensus disorder prediction 7 22 - -
Trre2g00664 264 MobiDBLite consensus disorder prediction 1 32 - -
Trre2g00664 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Trre2g00664 264 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 264 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00664 Trre-Chr2 5263942 5264736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00664 3 264 C2H2 Transcription Factor Family AT5G10970 37.919 2.74e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00664 - - lja:Lj5g3v0526470.1 253.447