Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00661 ATGGTGCGCAAAGGAATTAGTCACGGTGCTTGTGATTATCTGCTGAAACCTGTTACACTGACAGAGGCCATAAAAAAAAAAAAAAAGAAGTCTCGCGTTATTTGGACCCCTTCCTTACACCGCAAGTTTGTTGCTGCTGTTGATCAATTAGGAGGCATTGACAATGCTGTGCCGGTAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGCATGTGGCTAGCCATCTTTATAAATATAGACGATCTATCTGA 261 0.41 MVRKGISHGACDYLLKPVTLTEAIKKKKKKSRVIWTPSLHRKFVAAVDQLGGIDNAVPVKILDLMNVEKLTREHVASHLYKYRRSI 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00661 86 FunFam Two-component response regulator 25 86 - -
Trre2g00661 86 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 86 IPR017930 -
Trre2g00661 86 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Trre2g00661 86 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Trre2g00661 86 Gene3D - 26 86 - -
Trre2g00661 86 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 85 IPR044841 GO:0003700|GO:0006355
Trre2g00661 86 NCBIfam myb-like DNA-binding domain, SHAQKYF class 30 84 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00661 Trre-Chr2 5242747 5243568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00661 2 86 Response Regulator Gene Family AT4G31920 41.912 1.93e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g00661 Myb_DNA-binding 5.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00661 - K14491 mtr:25481957 105.145