Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00660 ATGAATGATCTTAGAGATACGTTTCCAATTGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACATGTCTCAAGATTTTGGAAAAACTTCTCCTAAAGTGTCAATACCATGTAACCACTGCTCAAAATGCGATAACTGCGCTGAACTTGTTGCGAGAAAACAAAAACAATTATGACTTGGTAATAAGCAATGTGCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGGACTTGAGATGGACTTACCTGTCATAATGTTTTCGGCAAATGATGATCCGAAGATGGTGCTTAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTAATACTGAAAGAGGTACAAATCATTTGGCAGCATGTGATCAGGAAGAAGAAGACTACCAGAAGAAGCAACCACGACGCGCCAAATTCTGATAGCGGAAATGGAATAGATTCTGCAGTGACAGGAAATTCTGATCAAAATGAAAGGTCTTCTAGAAAAAGAAAGGAAAAGAATGAAGATGATGCTGATGAGGAGAATGAGGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGAGTTGTTTGGACCCCTTCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATCGATAAGGCTGTGCCGAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATACAGACTCTATCTGAAAAGAATTAGTGAAGGGGAAAACCAACAAGCTAATATGGCTGCACTGTTAGGTAGTTCTTCGGATACATCCTATTCAATGATGACTTCTCTCAGTGGCTCTTCACAGTTTCATAACAATCCTTACAAATTCTTTGCATCTGGTGGTAGTATGAGTAGTAATGTGAATCTTGGATTCAACACTCCTACTAATGTGAATATGCATGGATTCTCTTCTTCTGGAACTCCTCAGCTGAATCACACACATAGCTTCAACAACTCAACACATGATCAGCTAAAGTTCCAATCGGCCATAACTCGCGACAATCTGAATGATGTTCAAAAAATGCCGATTTCGTCTGCAGGACTAGATCAATTGCTACACAGTAAAGGTATCACTGTTAGTCCTAATATTCAAAGCATGACCAATAAGCTTCCAGATTATTATAAACCAAAAGTAACAACGAGTTACACAAACAATGCCTTGATTTTAGACTCGAATCCTCAAGAGAAACAACTAGCTGAAGGATACAAAAATTTAGCCTCTCAGAATTCGCAGTTTCTTCCTGTACTTGAAAACAGAAGGTGCAGCGGTATTTGGTCGAACACCATGCAATTACCTGGAACAAACTCTTATCTTCCAAGAGAAGGTTTCGGCCATGCTTATGCGTCTCATAAGGATAACAGAAATGCTGTTTTGCCTCATACAGAAGCACATGAATTCTGCAATAATGTGCCATTTCAAGGTTGGGATAATAATCATGATGGAAGTTACCATTCTTCTCATGTGGTTGGAAGTTCAATAGGCTCAATGATTCCTGCTGTGAATGCTGTCGAACCAGAAGAAAACTTGGACTACAATTATTGTGATTCGGTACAAATGAAGCGTGATCGTACCACTGAGCTAACAGAAGGGTCGTCATTCAAACCACAACAGACATATATGATGAACAACCAGATGAAGTTTCAAAACAATGGAATCTCTAGTAATCATGGTTCACTCGAAGACGCTGTCCGTGACATGATCAAGCAGAATCAATTGTATGCTAATTTCTCTGGTGGCACAATGTGA 1797 0.3962 MNDLRDTFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQNAITALNLLRENKNNYDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVLKGITHGACDYLLKPVILKEVQIIWQHVIRKKKTTRRSNHDAPNSDSGNGIDSAVTGNSDQNERSSRKRKEKNEDDADEENEDDHDNDDPTAQKKARVVWTPSLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISEGENQQANMAALLGSSSDTSYSMMTSLSGSSQFHNNPYKFFASGGSMSSNVNLGFNTPTNVNMHGFSSSGTPQLNHTHSFNNSTHDQLKFQSAITRDNLNDVQKMPISSAGLDQLLHSKGITVSPNIQSMTNKLPDYYKPKVTTSYTNNALILDSNPQEKQLAEGYKNLASQNSQFLPVLENRRCSGIWSNTMQLPGTNSYLPREGFGHAYASHKDNRNAVLPHTEAHEFCNNVPFQGWDNNHDGSYHSSHVVGSSIGSMIPAVNAVEPEENLDYNYCDSVQMKRDRTTELTEGSSFKPQQTYMMNNQMKFQNNGISSNHGSLEDAVRDMIKQNQLYANFSGGTM 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00660 598 Gene3D - 190 253 - -
Trre2g00660 598 Pfam Response regulator receiver domain 14 118 IPR001789 GO:0000160
Trre2g00660 598 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Trre2g00660 598 MobiDBLite consensus disorder prediction 140 160 - -
Trre2g00660 598 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Trre2g00660 598 SUPERFAMILY Homeodomain-like 192 251 IPR009057 -
Trre2g00660 598 MobiDBLite consensus disorder prediction 131 192 - -
Trre2g00660 598 Gene3D - 11 144 - -
Trre2g00660 598 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 304 IPR045279 GO:0009736
Trre2g00660 598 FunFam Two-component response regulator 190 253 - -
Trre2g00660 598 PIRSF RR_ARR_type-B 1 598 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre2g00660 598 CDD REC_typeB_ARR-like 14 128 - -
Trre2g00660 598 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Trre2g00660 598 SMART REC_2 12 124 IPR001789 GO:0000160
Trre2g00660 598 SUPERFAMILY CheY-like 11 136 IPR011006 -
Trre2g00660 598 Pfam Myb-like DNA-binding domain 196 246 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00660 Trre-Chr2 5229267 5235351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00660 6 598 Response Regulator Gene Family AT2G25180 41.546 7.10e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre2g00660 Response_reg 1.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00660 - K14491 tpra:123915626 1002.66