Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00659 ATGAATGATCTTAGAGATACGTTTCCAATTGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACATGTCTCAAGATTTTGGAAAAACTTCTCCTAAAGTGTCAATACCATGTAACCACTGCTCAAAATGCGATAACTGCGCTGAACTTGTTGCGAGAAAACAAAAACAATTATGACTTGGTAATAAGCAATGTGCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGGACTTGAGATGGACTTACCTGTCATAATGTTTTCGGCAAATGATGATCCGAAGATGGTGCTTAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTAATACTGAAAGAGGTACAAATCATTTGGCAGCATGTGATCAGGAAGAAGAAGACTACCAGAAGAAGCAACCACGACGCGCCAAATTCTGATAGCGGAAATGGAATAGATTCTGCAGTGACAGGAAATTCTGATCAAAATGAAAGGTCTTCTAGAAAAAGAAAGGAAAAGAATGAAGATGATGCTGATGAGGAGAATGAGGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGAGTTGTTTGGACCCCTTCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATCGATAAGGCTGTGCCGAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATACAGACTCTATCTGAAAAGAATTAGTGAAGGGGAAAACCAACAAGCTAATATGGCTGCACTGTTAGGTAGTTCTTCGGATACATCCTATTCAATGATGACTTCTCTCAGTGGCTCTTCACAGTTTCATAACAATCCTTACAAATTCTTTGCATCTGGTGGTAGTATGAGTAGTAATGTGAATCTTGGATTCAACACTCCTACTAATGTGAATATGCATGGATTCTCTTCTTCTGGAACTCCTCAGCTGAATCACACACATAGCTTCAACAACTCAACACATGATCAGCTAAAGTTCCAATCGGCCATAACTCGCGACAATCTGAATGATGTTCAAAAAATGCCGATTTCGTCTGCAGGACTAGATCAATTGCTACACAGTAAAGGTATCACTGTTAGTCCTAATATTCAAAGCATGACCAATAAGCTTCCAGATTATTATAAACCAAAAGTAACAACGAGTTACACAAACAATGCCTTGATTTTAGACTCGAATCCTCAAGAGAAACAACTAGCTGAAGGATACAAAAATTTAGCCTCTCAGAATTCGCAGTTTCTTCCTGTACTTGAAAACAGAAGGTGCAGCGGTATTTGGTCGAACACCATGCAATTACCTGGAACAAACTCTTATCTTCCAAGAGAAGGTTTCGGCCATGCTTATGCGTCTCATAAGGATAACAGAAATGCTGTTTTGCCTCATACAGAAGCACATGAATTCTGCAATAATGTGCCATTTCAAGGTTGGGATAATAATCATGATGGAAGTTACCATTCTTCTCATGTGGTTGGAAGTTCAATAGGCTCAATGATTCCTGCTGTGAATGCTGTCGAACCAGAAGAAAACTTGGACTACAATTATTGTGATTCGGTACAAATGAAGCGTGATCGTACCACTGAGCTAACAGAAGGGTCGTCATTCAAACCACAACAGACATATATGATGAACAACCAGATGAAGTTTCAAAACAATGGAATCTCTAGTAATCATGGTTCACTCGAAGACGCTGTCCGTGACATGATCAAGCAGCAATTCTTGCAAGATAGCTTATGGAATTTCAATATTTTTGCTTATGATGTTTTCATATTCGACTATGTTCTTCCCCGTCTCACTTTCTTCCTCATCTCATGTCTTTGA 1866 0.3939 MNDLRDTFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQNAITALNLLRENKNNYDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVLKGITHGACDYLLKPVILKEVQIIWQHVIRKKKTTRRSNHDAPNSDSGNGIDSAVTGNSDQNERSSRKRKEKNEDDADEENEDDHDNDDPTAQKKARVVWTPSLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISEGENQQANMAALLGSSSDTSYSMMTSLSGSSQFHNNPYKFFASGGSMSSNVNLGFNTPTNVNMHGFSSSGTPQLNHTHSFNNSTHDQLKFQSAITRDNLNDVQKMPISSAGLDQLLHSKGITVSPNIQSMTNKLPDYYKPKVTTSYTNNALILDSNPQEKQLAEGYKNLASQNSQFLPVLENRRCSGIWSNTMQLPGTNSYLPREGFGHAYASHKDNRNAVLPHTEAHEFCNNVPFQGWDNNHDGSYHSSHVVGSSIGSMIPAVNAVEPEENLDYNYCDSVQMKRDRTTELTEGSSFKPQQTYMMNNQMKFQNNGISSNHGSLEDAVRDMIKQQFLQDSLWNFNIFAYDVFIFDYVLPRLTFFLISCL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00659 621 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Trre2g00659 621 MobiDBLite consensus disorder prediction 140 160 - -
Trre2g00659 621 MobiDBLite consensus disorder prediction 131 192 - -
Trre2g00659 621 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Trre2g00659 621 Gene3D - 190 253 - -
Trre2g00659 621 Pfam Response regulator receiver domain 14 118 IPR001789 GO:0000160
Trre2g00659 621 SUPERFAMILY CheY-like 11 136 IPR011006 -
Trre2g00659 621 CDD REC_typeB_ARR-like 14 128 - -
Trre2g00659 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Trre2g00659 621 Gene3D - 11 144 - -
Trre2g00659 621 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 302 IPR045279 GO:0009736
Trre2g00659 621 SMART REC_2 12 124 IPR001789 GO:0000160
Trre2g00659 621 Pfam Myb-like DNA-binding domain 196 246 IPR001005 -
Trre2g00659 621 FunFam Two-component response regulator 190 253 - -
Trre2g00659 621 PIRSF RR_ARR_type-B 1 605 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre2g00659 621 SUPERFAMILY Homeodomain-like 192 251 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00659 Trre-Chr2 5228892 5235351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00659 6 593 Response Regulator Gene Family AT2G25180 41.558 2.41e-110 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre2g00659 Response_reg 1.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00659 - K14491 tpra:123915626 984.171