Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00658 ATGAGTAGCTTGGTTGAGAGGCTTCGCGTAAAACCTGATCGCAAGCGATTTAATACTATAGACAAGTCAGATGATGAAGCTGATTTAATGCCCGGAAAAAAACCAAGAACTCTAGAAAAGTTTGAGAGGATTGTTAGAAGCGACGCAAAAGAGAATTCATGCCAAGCATGTGGAAAGAGTGGAAATCTTGTGAGCTGTGAAACATGCACTTATTCTTTCCACACCGGTTGTTTACCCGCGCCACTTAAAAGGCTCCGTCTGAACAACTTGATGTGCCATGAATGTGTTAGTCCACTTAATGATATTGATAAGATATTAGATTATGAGACGCGTCCTGCTGTAGCTGGTGAAACTGATGCCAAAGATTTGGTGCCGAAACAAAGTTCTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCGTATATGCATTGCAAATGGGTGCTAGAGGAAGAGTTTCTGAAGGCTTTCAAGTATAATACTGGTTTAAAGACCAAAGTAAACAACTTTCATCATCAATTGACACCAGATAAAAAATTGGATGAAGATTTTGTTGCTATTCGACCTGAATGGACTATGGTTGATCGAATAATTGCTTGCAGGGGCGATGGTGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCTTATGATGAAAGCAATTGGGAACTTGAGTCAGATATCTCCAAGTTTCAGGCAGAAATAGAGAGATTCAATTTATTTCAGTCCAGGTCTAGAAAATTTTCTTATGGCAAGCAAAAACGATGTGTTAACAATGATGCTGGATTGACAAAGCAACAGAAAGAATTTCAACAATATGAATGTAGCCCCGAGTTTCTTTCAGGGGGTACACTACATCCGTATCAACTTGAAGGATTGAACTTTCTTCGATTTTCTTGGTCCAAACAAACTCATGTTATACTTGCCGATGAAATGGGACTTGGAAAAACCATACAAACAATTGCTTTCTTAGCATCTCTTTTCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGCAACTTGGGCACCTGAAATGAATGTTATTATGTATGTTGGATCTTCCAAAGCTCGTAGCATTATTAGAGAATATGAATTTTACTTTCCGGAGAAAAACAAGAAAAACAAAAGCATCAAATTTGATGTCCTTTTGACATCGTATGAGATGATAAACTTCGATGCTGCAGCATTGAATCCGATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCAAAATTGTTTTCTTCGTTGAAGCAATTCTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTCTTTATACTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAACAACAGATTTTGAGGCTTCATAAACTGTTGGCTCCGCATCTCCTGCGAAGAGTGAAGAAAGATGTCCTGACTAAACTACCTCCTAAAAAGGAGCTTATTATACGCGTTGAATTGAGCAGCAAGCAGAGAGAATATTATAAGGCGATTTTGACTCGTAATTATAATGTATTAACTGGCCATGGTGGAGCACAATTTTCTCTTAACAATGTTGTTATGGAACTGCGTAAGCTATGTTGTCATCCGTACATGTTGAAAGGAGTTGGACCAGTTCCGGTTGAAGAAAAAGAAGCATATAAACAACTGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTGTTGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATATTCCCAATTTCAGGGAATGTTGGACATGCTTGAAGATTATTGTGTTTCCAAGCATTGGCAGTATGAAAGGATAGATGGCAAGGTTGGCGGAACTGAAAGACAAGTACGGATAGATCAATTTAATGCGAAAAATTCTTCAAAATTTTGTTTTCTTCTTTCTACTAGAGCTGCTGGAGTAGGGATAAACCTCGCAACGGCTGACACAGTTATTTTATATGACAGTGATTGGAATCCTCATGCTGATCTGCAAGCGATGGCAAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACACGAGGAACAATCGAAGAAAGGATGATTGAAATAGCAAAGAAGAAAATGGTTTTAGAACACTTAGTTGTAGGTGGTATGAAGGGTGAAAATATTAACCAGGAAGAGTTGGACGATATCATAAGGTATGGCTCAAAGGAGTTGTTTGCTGATGAGAATGATGCAGAGGGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGATTATTGGATCGCAATCAAGTTGGAGATGAAGAGGCCACTTTGGACGATGAAGATGAAAATGGACTTCTGAAAGCTTTTAAGGTGGCTAATTTTGGATACATCGATAAAGCCGAGTCTGAAGAAGAAATAGAGAATAATTTTTCAGTGAGCAGTTCAGGACGGCAAAAATACTGGAAGGAACTGCTTAAAGGCAGATATCAGAAAAGCACAGTTGAACAGCTAGATGCCTTGGGCAAAGGAAAGCGAAGCCGGAAAAAAATGCTGATGGTTTCTTTTAAGGTGAGCGGTTTTGTTCATTTAGAGGATGTAATCTCCGATGACGAAGATGAAGATTACGAAGTGAATCTTACTGCGAAATCGAAAAAGAAAGCTCATAGTAATATTGCAGATAACACAAATTCACTTCCTTTAATGGAAGGTGAAGGAAATTCACTTAAAGTACTTGGTTTTACTCAAAGTCAGAGGAACACTTTCTTTCAAATTTTAATGAGGTTTGGGATTGGTGATTTTGATTGGAAGGAGTTTGCTCCGCGCATAAAGCAGAAGACTTGGCACGAAATCAATGCGTATGGAAACCTTTTCTTGTCTCATATTGCTGAAGATATAAATGATTCCCCGACATTCTCAGATGGTGTTCCGAAAGAAGGACTTCAAATACAAGATGTACTTGTTAGAATTGCGGTTCTGCTATCGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAATCCCGGCACTCCACTTTTTTCAGACGGCATCTTGTCACGCTATGCAGGCTTGAAAGTAAGAGAGGCATGGAAGGAGGAGCATGATTTAGTCTTACTACGCGCAGTTTTGAAGCATGGATATGGAAAGTGGACAGCTATTTTTGATGATAAGGATTTGAATATTCAGACGATCATCTGTCAAGAGTTAAAATGCGTCAATGTCATGGAGAGAAGACAGATTGATTTTATAAAAAGGAGATTTCTCCTTTTGGAGAAATGTCTCAACGATGAGTGCGCGAAAGAATTCACTGATGATATTTCGGCAAAGGAACCTGAGGTGGCTACAGATGTAAGAAGGCATGTTTTAGGAGTTAACCAGAAGATTGACAATTGA 3468 0.3919 MSSLVERLRVKPDRKRFNTIDKSDDEADLMPGKKPRTLEKFERIVRSDAKENSCQACGKSGNLVSCETCTYSFHTGCLPAPLKRLRLNNLMCHECVSPLNDIDKILDYETRPAVAGETDAKDLVPKQSSVKQYLVKWKGLSYMHCKWVLEEEFLKAFKYNTGLKTKVNNFHHQLTPDKKLDEDFVAIRPEWTMVDRIIACRGDGDEREYLVKWKELPYDESNWELESDISKFQAEIERFNLFQSRSRKFSYGKQKRCVNNDAGLTKQQKEFQQYECSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQTIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPEMNVIMYVGSSKARSIIREYEFYFPEKNKKNKSIKFDVLLTSYEMINFDAAALNPIKWECMIVDEGHRLKNKDSKLFSSLKQFSSRHRVLLTGTPLQNNLDELFILMHFLDAGKFGSLEEFQEEFKDINQEQQILRLHKLLAPHLLRRVKKDVLTKLPPKKELIIRVELSSKQREYYKAILTRNYNVLTGHGGAQFSLNNVVMELRKLCCHPYMLKGVGPVPVEEKEAYKQLLESSGKLQLLDKLLVKLKEQGHRVLIYSQFQGMLDMLEDYCVSKHWQYERIDGKVGGTERQVRIDQFNAKNSSKFCFLLSTRAAGVGINLATADTVILYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIEIAKKKMVLEHLVVGGMKGENINQEELDDIIRYGSKELFADENDAEGKSRQIHYDDAAIDRLLDRNQVGDEEATLDDEDENGLLKAFKVANFGYIDKAESEEEIENNFSVSSSGRQKYWKELLKGRYQKSTVEQLDALGKGKRSRKKMLMVSFKVSGFVHLEDVISDDEDEDYEVNLTAKSKKKAHSNIADNTNSLPLMEGEGNSLKVLGFTQSQRNTFFQILMRFGIGDFDWKEFAPRIKQKTWHEINAYGNLFLSHIAEDINDSPTFSDGVPKEGLQIQDVLVRIAVLLSIREKVKFASENPGTPLFSDGILSRYAGLKVREAWKEEHDLVLLRAVLKHGYGKWTAIFDDKDLNIQTIICQELKCVNVMERRQIDFIKRRFLLLEKCLNDECAKEFTDDISAKEPEVATDVRRHVLGVNQKIDN 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00658 1155 Gene3D - 278 514 IPR038718 -
Trre2g00658 1155 CDD CD2_tandem 190 239 - -
Trre2g00658 1155 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Trre2g00658 1155 Pfam CHD subfamily II, SANT-like domain 909 1040 IPR009462 GO:0003677|GO:0006338
Trre2g00658 1155 Pfam Helicase conserved C-terminal domain 595 708 IPR001650 -
Trre2g00658 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 762 IPR027417 -
Trre2g00658 1155 SMART DUF1087_2 823 886 IPR009463 -
Trre2g00658 1155 CDD CD1_tandem 98 171 - -
Trre2g00658 1155 SMART PHD_3 53 96 IPR001965 -
Trre2g00658 1155 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Trre2g00658 1155 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 156 IPR023780 -
Trre2g00658 1155 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
Trre2g00658 1155 Gene3D - 515 739 IPR027417 -
Trre2g00658 1155 Coils Coil 475 495 - -
Trre2g00658 1155 CDD SF2_C_SNF 608 719 - -
Trre2g00658 1155 SMART helicmild6 624 708 IPR001650 -
Trre2g00658 1155 Gene3D - 181 241 - -
Trre2g00658 1155 Gene3D - 1010 1127 - -
Trre2g00658 1155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Trre2g00658 1155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 598 759 IPR001650 -
Trre2g00658 1155 SMART chromo_7 190 244 IPR000953 -
Trre2g00658 1155 SMART chromo_7 99 175 IPR000953 -
Trre2g00658 1155 SUPERFAMILY Chromo domain-like 66 171 IPR016197 -
Trre2g00658 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 505 IPR027417 -
Trre2g00658 1155 SMART DUF1086_2 891 1043 IPR009462 GO:0003677|GO:0006338
Trre2g00658 1155 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Trre2g00658 1155 SMART ultradead3 282 481 IPR014001 -
Trre2g00658 1155 ProSiteProfiles Chromo and chromo shadow domain profile. 192 239 IPR000953 -
Trre2g00658 1155 Pfam SNF2-related domain 306 572 IPR000330 GO:0005524|GO:0140658
Trre2g00658 1155 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 24 1123 - -
Trre2g00658 1155 Gene3D - 100 175 - -
Trre2g00658 1155 Pfam CHDCT2 (NUC038) domain 1053 1123 IPR012957 -
Trre2g00658 1155 SUPERFAMILY Chromo domain-like 184 240 IPR016197 -
Trre2g00658 1155 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 470 IPR014001 -
Trre2g00658 1155 Pfam CHD subfamily II, DUF1087 828 881 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00658 Trre-Chr2 5208874 5218913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00658 308 769 RAD5 or RAD16-like Gene Family AT1G02670 23.801 4.84e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g00658 SNF2_N 4.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00658 K11643 - gmx:100804203 1630.54