Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00657 ATGGCTAACTGTCACCGGAACAACGTCGGAAACCTCGTTCTCGGCCACCACCACCACAACTCCACCAAAACAACGACATTCTCCAACCATTTCCGCTTATGGAACTCTCGCTCCATCGCTTCCCTCCGTCGCATCATCCTCGACGCCGTCAGCTGCGGTGCTAGCTCTCGTTACAATCACCGCCGAAGAAGCACTCTCGACGAATATGACACTGAAGACTTCTCTTCAGCAACGAGATCGGACTCTTCTTCTTCCTTCGATAAACGGAAACACAAACAGGAAAATCAAATCTGTAAACCGAATGCGAAATCGGAGAAACTTTCCGATCTTCTCAACATAGCGGAGATGGAAACAGAAGCGGAGGCGAAGAAGAAAGAAGAAGCGCTAGAAGAACTGAAGCGTCTCGTGAAGGATTTACACAACGAAGAAGATTCAGTTAAACGGCGAGAAGCTGCAACCACCGTGAGAATGCTTGCTAAGGAGAATTTAGAAGTTCGTGAAACTCTCGCTATGCTCGGAGCTATTCCGCCTCTCGTCACAATGCTCGATTCGCAAGACGTTGATTCTCAGATCGCTTCACTCTACGCATTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTATTGAATGTTCGGATGGTATTGATTCTGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCTGCTGCAATATCCTTTTTAGTTAGAACCCTTCAGAGTTTAGATAAGAAAAAAAGTAGTAGAAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATTTTCCCAGCCAATATTCCATTCATTTTGGAAACTGATTTGGTACCGTTTTTGATAAACTCGATTGGAGATATGGAAGTAACTGAAAGAAACCTCTCCATCCTTAGCAATTTGGTATCGACTAGAGCGGGTAGAAAAGCGATAAGTAGTGTTCCTGATGCATTTCCTATCTTGGTGGATGTATTGAATTGGACGGATTCACCTGAATGCCAAGAAAAAGTTTCTTATGTTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATTGAAGCTGGGATTATGTCATCGCTCCTTGAGTTGTCACTTATCGGTAGTACTTTGTCTCAGAATCGGGCGTCAAGGCTATTGGAAATTTTGAGACTAGACAAAGGGAAACAGGTTTCTGGGAACTACGGCGGAAGTTTAGGCACAGCTGTCTCCGCCCCAATTTGTGGAACTTCGAAACCAGATGAAGGAGGAGGAAAAGCATGTTTGGAAGAGGACGAAGATATGATGAGCGAGGAAACGAAAGCAGTGAAACAATTAGTCCAATTAAGTTTACAAAACAACATGAGAAAAATTGTGAAGAGGGCCAACTTGCCTCAAGATATCGTTCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCAAAGAGCTTACCATTCTGA 1545 0.4298 MANCHRNNVGNLVLGHHHHNSTKTTTFSNHFRLWNSRSIASLRRIILDAVSCGASSRYNHRRRSTLDEYDTEDFSSATRSDSSSSFDKRKHKQENQICKPNAKSEKLSDLLNIAEMETEAEAKKKEEALEELKRLVKDLHNEEDSVKRREAATTVRMLAKENLEVRETLAMLGAIPPLVTMLDSQDVDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIECSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAISFLVRTLQSLDKKKSSRNQVKQDALRALYNLSIFPANIPFILETDLVPFLINSIGDMEVTERNLSILSNLVSTRAGRKAISSVPDAFPILVDVLNWTDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGIMSSLLELSLIGSTLSQNRASRLLEILRLDKGKQVSGNYGGSLGTAVSAPICGTSKPDEGGGKACLEEDEDMMSEETKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00657 514 Pfam Armadillo/beta-catenin-like repeat 165 200 IPR000225 GO:0005515
Trre2g00657 514 SMART arm_5 248 294 IPR000225 GO:0005515
Trre2g00657 514 SMART arm_5 204 247 IPR000225 GO:0005515
Trre2g00657 514 SMART arm_5 162 202 IPR000225 GO:0005515
Trre2g00657 514 SMART arm_5 377 418 IPR000225 GO:0005515
Trre2g00657 514 SMART arm_5 295 333 IPR000225 GO:0005515
Trre2g00657 514 MobiDBLite consensus disorder prediction 67 96 - -
Trre2g00657 514 Gene3D - 80 275 IPR011989 -
Trre2g00657 514 SUPERFAMILY ARM repeat 131 417 IPR016024 -
Trre2g00657 514 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 514 - -
Trre2g00657 514 Gene3D - 276 427 IPR011989 -
Trre2g00657 514 Coils Coil 111 149 - -
Trre2g00657 514 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 173 215 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00657 Trre-Chr2 5196123 5198074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00657 97 440 U-box Gene Family AT1G24330 29.917 3.69e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00657 - - psat:127098188 800.431