Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00608 ATGGATAAAAAGGTGGAAACTCTTCAATTAGAGTTACAACAAGTGAGAGAAGACAACAATACTTTAAGATTTATGCTTGAAGTTATGAGTATCAAGTGCACAAAGCTTGAGTCCCAACTTCCAGAGATTAAAAAGGAAGAACACAAAGGAACAAGTTCAAATCAAATTGGTTTAGTACCTAACCTTGACTCAAGCAAAAAACCAAGACTAGAGTTTCCAACAGCAAAAAAGCCATTAGAAGTCTTTGTCAGAACCAATCCTAATGATGATAGTTTGACAATAAAAGATGGATATCAATGGAGGAAGTATGGGCAGAAGGTCACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCTATGGCTCCTAGTTGCCCTGCAAAAAAGAAGGTACAAAAATGCATACATGATAGGTCCATCATTGTTGTAACATATGATGGAGAGCACAACCATGGTGTCCCTCATGAGTCATTCAAACCATCTTCATCCACATCTAAATTTTCATCAATATTTAATAAAAATTTACCACCAACATTAAATGACAAAGAAACCATAAACACTGGAATTTGTGAGGATGTCATGCAACAGTTTGGCTATGGAAAGCACATCAAAATTCAAGAATATGCAAGTTCCCTAATCAAAGATTTTGATTTCACCGCAGCATTGGCCGAAGCAGTTGCACAAAATATCACCGGTCAACATAAGCGACAAGGTCTAAACCTCGATTTGAATCTTTCAGAAGAATGA 750 0.368 MDKKVETLQLELQQVREDNNTLRFMLEVMSIKCTKLESQLPEIKKEEHKGTSSNQIGLVPNLDSSKKPRLEFPTAKKPLEVFVRTNPNDDSLTIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIHDRSIIVVTYDGEHNHGVPHESFKPSSSTSKFSSIFNKNLPPTLNDKETINTGICEDVMQQFGYGKHIKIQEYASSLIKDFDFTAALAEAVAQNITGQHKRQGLNLDLNLSEE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00608 249 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00608 249 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00608 249 Gene3D WRKY domain 80 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00608 249 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 235 IPR044810 GO:0003700
Trre2g00608 249 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00608 249 SUPERFAMILY WRKY DNA-binding domain 91 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00608 249 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00608 Trre-Chr2 4939645 4941283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00608 66 235 WRKY Transcription Factor Family AT1G80840 39.560 3.30e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g00608 WRKY 5.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00608 - - mtr:11435998 394.43