Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00607 ATGGAATCAACATGTGTCGATACTTCTCTCAATCTTAACAATATTAATCATCCTTCTTCTGCTACATACAAGGATGAAATTTTGGTTGAAGAGTTACATCGTCTCAATTGTGAGAACAAGAGGCTAAGTGAAACATTGAGCAACATGTGTGAAAATTATGAAGCTATGCAAAAGCAATTGAATGAATTGATGAATCAAAATTGTGAACACCAAACTCAAGAATCAAGGAAGAGAAAAGCTGAGAGTGAAAATTGCAACAATATGTTTGGTACTATTGGAGGAATTAATAATGAGTGCAGCACTACTGATGAAGAATCATTAATCAAAAGGCCATGTGGGGATATTTCATCACCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTATATGTGATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTTACTAGAGATAATCCCTCTCCTAGAGCTTACTTTAGGTGCTCCAATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTACAAAAAAGTTTAGAAGACCCTACTATACTTGTTGCAACATATGAAGGAGAGCACAACCATGGTCATGAGAAAGCTGAATTATCAATGATATCAAGCCAAATTGAAGGATCCATTATAGGTTCAGTTCATGTTACTTCACCTAAACAAATAATTCAAATGTCTTCTCCATCCATGAAGATTAACAATGTTGACAATTTTCCAAAATCATCTATCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAATGATCCTAATTTCACTGCAGCTCTTGCTAGTGCCATTTCAGGGAGAATTTTGGACCATACTTCTAGTAAGGCCAATTGGTGA 858 0.359 MESTCVDTSLNLNNINHPSSATYKDEILVEELHRLNCENKRLSETLSNMCENYEAMQKQLNELMNQNCEHQTQESRKRKAESENCNNMFGTIGGINNECSTTDEESLIKRPCGDISSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSNAPSCPVKKKVQKSLEDPTILVATYEGEHNHGHEKAELSMISSQIEGSIIGSVHVTSPKQIIQMSSPSMKINNVDNFPKSSIQQFLVQQMATSLTNDPNFTAALASAISGRILDHTSSKANW 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00607 285 Pfam WRKY DNA -binding domain 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00607 285 Coils Coil 32 83 - -
Trre2g00607 285 ProSiteProfiles WRKY domain profile. 131 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00607 285 Gene3D WRKY domain 120 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00607 285 SMART WRKY_cls 136 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00607 285 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 276 IPR044810 GO:0003700
Trre2g00607 285 SUPERFAMILY WRKY DNA-binding domain 133 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00607 Trre-Chr2 4935387 4937061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00607 3 275 WRKY Transcription Factor Family AT1G80840 43.522 2.69e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g00607 WRKY 2.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00607 - - gmx:100810978 309.686