Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00604 ATGGAGGAGTTGAAGGCAAACATGTTATTTGACAAGTACGAGGTGGGAAGAATACTAGGTAAAGGAACATTTGCAAAAGTGTACTATGCCAAAGATATTGCTACGGGTGAAGGTGTAGCAATTAAAGTTATAGACAAAGACAAAGTGAGAAAAGAAGGCATGATGGAACAAATCAAACGTGAAATTTCGGTGATGAGGTTAGTAAAACATCCAAACATCGTCAACCTTAAAGAAGTCATGGCAACAAAGACCAAAATTTTGTTTGTGATGGAGTATGCACGTGGCGGTGAATTATTCGATAAAGTTGCGAAAGGTAAATTTAAAGAAGAACTTGCAAGGAAGTACTTCCAACAACTTATTAGCGCGGTTGATTATTGTCATAGTAGAGGTGTTTCACACCGTGATTTGAAACCAGAAAATATGTTACTCGATGAAAACGGAGATCTTAAGGTGTCTGATTTTGGACTCTCTGCTTTGCCTGAACAACTTCGCCAGGACGGGCTTTTACATACTCAATGTGGAACTCCAGCTTACGTGGCACCCGAGGTAGTTAGAAAAAGAGGTTATAGCGGTTTTAAAGCCGATACTTGGTCATGTGGTGTTATTCTTTATGCTTTACTTGCTGGATTTTTACCTTTTCAACATGAAAATTTAATGTCCATGTATAATAAAGTTTTCAAAGAAGAGTATCAATTTCCTCCTTGGTTTTCGCCTGAATCGAAGAGATTAATCTCGAAGATTCTAGTAGCTGATCCAGAAAGAAGAATCACTATTCCATCAATCATGAATGTTCCATGGTTTCGAAAAGGGTTCGATCTTTCGGGGTTGTTCGAGGAAAAGAAAAAAAGGGGTTCAATTTTTACTTCAAAGTGTTCGGTTTCGGAGATTGTAACAAAAATCGAAAGTGTTGCGAAAAATTTAAAGTTTAAGGTTAAGAAGGCTAAGGATTTCAAACTAAAGTTACAAGGGTCTTTTGAAGGGAGAAAAGGAAAGTTGGCCATGTCGGCGGAGATATACGAGGTGGCGCCGGAGCTTGCAGTGGTTGAATTTTCCAAGAGTTCCGGTGATACTTTTGAATATGTTAAGTTGTTTGAAGAAGATGTTAGGCCTGCTCTCAAAGACATTGTTTGGTCATGGCAAGGGGAGTGA 1149 0.3873 MEELKANMLFDKYEVGRILGKGTFAKVYYAKDIATGEGVAIKVIDKDKVRKEGMMEQIKREISVMRLVKHPNIVNLKEVMATKTKILFVMEYARGGELFDKVAKGKFKEELARKYFQQLISAVDYCHSRGVSHRDLKPENMLLDENGDLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVVRKRGYSGFKADTWSCGVILYALLAGFLPFQHENLMSMYNKVFKEEYQFPPWFSPESKRLISKILVADPERRITIPSIMNVPWFRKGFDLSGLFEEKKKRGSIFTSKCSVSEIVTKIESVAKNLKFKVKKAKDFKLKLQGSFEGRKGKLAMSAEIYEVAPELAVVEFSKSSGDTFEYVKLFEEDVRPALKDIVWSWQGE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00604 382 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Trre2g00604 382 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Trre2g00604 382 FunFam Non-specific serine/threonine protein kinase 6 306 - -
Trre2g00604 382 Gene3D Kinase associated domain 1, KA1 270 378 - -
Trre2g00604 382 CDD STKc_SnRK3 12 266 - -
Trre2g00604 382 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 373 - -
Trre2g00604 382 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00604 382 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00604 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Trre2g00604 382 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00604 382 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Trre2g00604 382 CDD CIPK_C 270 373 - -
Trre2g00604 382 Gene3D Transferase(Phosphotransferase) domain 1 93 269 - -
Trre2g00604 382 SUPERFAMILY Protein kinase-like (PK-like) 9 274 IPR011009 -
Trre2g00604 382 Pfam NAF domain 269 313 IPR004041 GO:0007165
Trre2g00604 382 FunFam Non-specific serine/threonine protein kinase 267 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00604 Trre-Chr2 4910715 4911986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00604 2 382 CBL-interacting serine-threonine protein kinases AT5G25110 63.594 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre2g00604 Pkinase 6.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00604 - - vvi:100259329 583.563