Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00583 ATGGCTATTAAGCTCTGCGATTCCTGCAAGTCAGTAAAGGCAACACTATTCTGCCGTTCTGACTCAGCTTTCCTATGTATCACCTGTGACTCCAACATCCACGCAGCTAACAAACTCGCCTCCCGCCACCACCGTGTCTCACTTTGCGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAAGCTGACGCCGCCGCTCTCTGTGTCTCCTGCGATCATGACATCCACTCCGCTAACCCCCTTGCTCGCCGTCACGAACGCATCCCTCTAACCACCTTCCACCACAACAACAGCCAGCAACAATTCTTCTCCGAATCCGATCCCGATGCTGACGTCAGCACCGAAGAAGCCGAAGCTGCTTCTTGGCTCCTCCAAACTCCTTCCAACCCTAAATTTCCCGATCTCAACACCTCTCACTACTCATTCACCGATGTCGACGCTACCGACCTCGATTTCGTCTCCGTCGACACTAAAACAGACTTACCGGAGCAACAAAGTCCCGGCACCGCAGACGGAGTCGTACCAGTGCAGTCTCAGAGCAAAACCGCCACCGAACAATACTCCGATATCAACATCGATTTCTCAAACTCCAAACCTTTCACTTACAGTTACAATCACAACGTATCGTCGCCGTCGATGGAAGTTGGAGTTGTACCGGACGGGAATACGGAGATATCGTACTGTGGTTACCGGACAACTGCAACGGAGGCGGTGGTGATGACGGCGGCGGATAGAGAAGCTAGAGTTATGAGATACAGAGAGAAGAGAAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCTGATTTGAATGTGAATCTAATTGCAGAAGATGAATACGGCGTCGTTCCGACCTGTTGA 924 0.5076 MAIKLCDSCKSVKATLFCRSDSAFLCITCDSNIHAANKLASRHHRVSLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLARRHERIPLTTFHHNNSQQQFFSESDPDADVSTEEAEAASWLLQTPSNPKFPDLNTSHYSFTDVDATDLDFVSVDTKTDLPEQQSPGTADGVVPVQSQSKTATEQYSDINIDFSNSKPFTYSYNHNVSSPSMEVGVVPDGNTEISYCGYRTTATEAVVMTAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNVNLIAEDEYGVVPTC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00583 307 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Trre2g00583 307 SMART bboxneu5 49 91 IPR000315 GO:0008270
Trre2g00583 307 SMART bboxneu5 1 48 IPR000315 GO:0008270
Trre2g00583 307 CDD Bbox1_BBX-like 5 48 - -
Trre2g00583 307 Pfam CCT motif 246 288 IPR010402 GO:0005515
Trre2g00583 307 ProSiteProfiles CCT domain profile. 246 288 IPR010402 GO:0005515
Trre2g00583 307 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Trre2g00583 307 Pfam B-box zinc finger 5 47 IPR000315 GO:0008270
Trre2g00583 307 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Trre2g00583 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 290 IPR045281 GO:0009909
Trre2g00583 307 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00583 Trre-Chr2 4749807 4750845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00583 1 306 C2C2-CO-like Transcription Factor Family AT5G24930 52.473 4.40e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre2g00583 zf-B_box 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00583 - - psat:127091607 538.11