Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00579 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAAGACATGATGGACATTGAAGTTCTATCATCAATGTGGCCAGATGATGTTGGAACTGATGTTGGAAAACAGTTCAATATAGAAAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGTTAACAAATTATACAGAAAAAGGGTCATCTCAATTGGCTTATTTAATGCAACATTGGGAGTATAAGCAAGCGAACGCGGTTCGACTTCTTCGAGAAGAGCTTGATAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATAATTAAAGATAATAACCGATTTGAGGAAGAGAGTTACGCGGGTGATAAACGTCCGGTTTCGATATTAGATGATGCTTATTATACATGGCAAGATCTACCTGTTGCAATAAGGAAAAGTGATGTTGTTGTCGAAAACAAGAGGGTTGAAATTGAAGCTGAGTATGATACTGTTCTTTATTGGAAACATCGGTCGCAAGATTTGGAAAAACAGTTGGAGGCGAGTATTCGGAGAGAGGAGATATTGAAGGAAAAATTGCAAGAAAGTATTGAGACTATTGAAAGACAATCCTCACCTGTGGAAGAGTTGTCACAGATTCTTAAAAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACGGGATCAGGTGTGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAGTAGCTGCAAAAAAGGAAATAACTTTTGAGACGGAACTATTTGGATCGAAGACATTTTTGATATATGTAGAACCCGTGTTTAGCAAAGCAGGTGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAACTAAGGGAAGAAATTGCAGTTCAGAAAGCAAAGGAAACAGAACTTAATAAAACAATTCATATTACAGAGGAGACAATGAGAGCTAAACAGATGCTGGCAACAATGTCTCATGAGATAAGATCGCCGCTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACTACAACAAAACTTGATAAGGAGCAAAGACAGCTTTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATTAATGACATACTTGATCTTTCCAAGGTTGAATCAGGAGCTATGAAATTGGAAGCTACGAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTGCTCCAAACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAAACATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGAATTAGGCAGATTCTGACAAATTTAGTCAGCAATGCCGTCAAGTTTACACATCAAGGCAAAGTCGGTATAAACCTTTATGTTATTCCAGAGCCACCATTTGCGAAAGCAGAAGAATCTAACCAAAAGGTGACAGAAAATCAGTCAACTATTTCAGCAAATGGATTGAAGGAAGAGAAGTATACATCATCACCAAGAAGTGCTAGATGTGATCAAAATCTTATTGATGATAAAAAGCACACTGACCAACCAATTCAAAATCATGCATTTAGCAATGAATGTAGATCTTCGGTTAACAGTGAATGCTCAATGAATGATGATGATACTGAGGAACAACATCATTCAACCGAAACAACAGTGTGGATACGTTGTGATGTGTACGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCAGATCATGCTCGAAAATATGGAGGCACGGGTCTAGGACTAGCAATATGTAAACAACTGGTTGAGTTGATGGGGGGTCGTCTAACGGTGACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTATCAACAACTTGTGATAATTCTGATGATCCAGATGAGCTTTCGGATGTTGATAATAATGAAGATGACACAACCGAGGGATTCTTCCAATTCCAACCGCGAACTTTAGGCTCGCTTTTCACTTCTAATGGATCCACCAGGCCACACAGAATCTCACACAAGTTCAATGGTTTTCCAGACAACAATTGTCACTCAAATCTCTCTAGTAACATAATTTCAAATGGAATAAATTCACTTGAAGATGCATCTTCTGTTATTGCCGATGCTTCAGATATGTCTGAATCAACAAGTTCAACGAGTCATAGCACAGAAACAAAGAATGAAAGTTTAGTTAATGGAAACAAACAGAACCATGATAATAAGACACATGATAAGTTACAAAATGGTTTTGCAAAATCTAGTCAATGTAAGGATGCAAGTAGAGAAATGAATTTAGAAACAAATCCAAGTGAAGCGAAACAAATACGGCAATGTCAAGGAAAGGAAGATAGTACTAGTAGCACTAGCGTATCATCAGAAGTAACCAAATCGACATTAAAGCCGAATATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATACCATGGATGTTGTGAATAATGGAGTGGAAGCCATACGCGCAGTTCAGAGTCATTCTTACGACATTATTTTAATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTACGAGGAAACAGGCAACTGGGATGCTTCAAAAGAAGCTGGAATTGAACAAAGCTTATCGGCTTCAGATGAATGTTCTGTACCACCTAAAAAGCGCATCCACGTTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAAGAATGTTTCGCCATCGGTATGGACTCATTTGTGTCAAAACCAGTCACATTTCAAAAAATGAAAGAGTGTCTTGAAAAGTATCTAAGGTGA 3033 0.3752 MVCEMESDCIEDMMDIEVLSSMWPDDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTEKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEIIKDNNRFEEESYAGDKRPVSILDDAYYTWQDLPVAIRKSDVVVENKRVEIEAEYDTVLYWKHRSQDLEKQLEASIRREEILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGVAAKKEITFETELFGSKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGNIADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVIPEPPFAKAEESNQKVTENQSTISANGLKEEKYTSSPRSARCDQNLIDDKKHTDQPIQNHAFSNECRSSVNSECSMNDDDTEEQHHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVDNNEDDTTEGFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDNNCHSNLSSNIISNGINSLEDASSVIADASDMSESTSSTSHSTETKNESLVNGNKQNHDNKTHDKLQNGFAKSSQCKDASREMNLETNPSEAKQIRQCQGKEDSTSSTSVSSEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYTMDVVNNGVEAIRAVQSHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDASKEAGIEQSLSASDECSVPPKKRIHVVAMTANTMSESAEECFAIGMDSFVSKPVTFQKMKECLEKYLR 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00579 1010 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Trre2g00579 1010 Gene3D - 363 440 - -
Trre2g00579 1010 Gene3D PAS domain 216 352 - -
Trre2g00579 1010 Gene3D - 441 691 IPR036890 -
Trre2g00579 1010 CDD HATPase_EvgS-ArcB-TorS-like 491 683 - -
Trre2g00579 1010 CDD REC_hyHK_CKI1_RcsC-like 868 1005 - -
Trre2g00579 1010 FunFam Histidine kinase 5 217 352 - -
Trre2g00579 1010 Coils Coil 346 366 - -
Trre2g00579 1010 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Trre2g00579 1010 Gene3D - 860 1010 - -
Trre2g00579 1010 MobiDBLite consensus disorder prediction 775 858 - -
Trre2g00579 1010 FunFam Histidine kinase 5 860 1010 - -
Trre2g00579 1010 Coils Coil 93 127 - -
Trre2g00579 1010 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Trre2g00579 1010 ProSiteProfiles Response regulatory domain profile. 867 1009 IPR001789 GO:0000160
Trre2g00579 1010 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 684 IPR003594 -
Trre2g00579 1010 FunFam Putative histidine kinase 5 363 440 - -
Trre2g00579 1010 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Trre2g00579 1010 SMART REC_2 866 1005 IPR001789 GO:0000160
Trre2g00579 1010 Coils Coil 181 212 - -
Trre2g00579 1010 SUPERFAMILY CheY-like 866 1010 IPR011006 -
Trre2g00579 1010 SMART HKATPase_4 486 686 IPR003594 -
Trre2g00579 1010 FunFam Probable histidine kinase 1 574 689 - -
Trre2g00579 1010 MobiDBLite consensus disorder prediction 775 801 - -
Trre2g00579 1010 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 1009 - -
Trre2g00579 1010 ProSiteProfiles Histidine kinase domain profile. 382 686 IPR005467 -
Trre2g00579 1010 Pfam Response regulator receiver domain 868 936 IPR001789 GO:0000160
Trre2g00579 1010 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 683 IPR036890 -
Trre2g00579 1010 PRINTS Bacterial sensor protein C-terminal signature 670 683 IPR004358 GO:0016310|GO:0016772
Trre2g00579 1010 PRINTS Bacterial sensor protein C-terminal signature 611 625 IPR004358 GO:0016310|GO:0016772
Trre2g00579 1010 PRINTS Bacterial sensor protein C-terminal signature 646 664 IPR004358 GO:0016310|GO:0016772
Trre2g00579 1010 MobiDBLite consensus disorder prediction 812 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00579 Trre-Chr2 4727705 4732100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00579 1 547 Histidine Kinase Gene Family AT5G10720 68.488 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g00579 HATPase_c 4.2e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00579 - - cam:101512841 1722.98