Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00578 ATGTGGCCAGAAGATGTTGAAACTGATTTTGGAAAACAGTTCAGTATAGAAAAACCAGGAATGGATCAAGATATTTTGGAAGAAGTAACAATCTTAGAGGAACCAATTGTAGCTGATTTTCAAAGAATTGTTGAGCATACAAATTGTACAAATCAAGGGTCTTTTCAATTAGCTAATCTCATGAAAAATTGGGAGCATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGACAACCTTACGAAACAAAGGGAGGAAGTTGATCTTAGAAAGTTGGAGATACTTCGATTCAAGGAAGAAAGTAATTACAGTGGAAACAAATGTCCAGTTTCGATATTGGACGATGTTGTTCAAAACAAGAGAGTTGAAATTGAGGCCGAGTATGATACCGTTGTTTACTGGAAAAATCGGGCAGTCGATTTGGAAAGACAGATGGAGGCAAGTATTCGGAGAGAGGTGATATTAAAGGAAAAGTTGCAAGAAAGTATAGAGACTATTGAAAGACAATCCTCACCTGTGGAGGAACTGTCACAGATTCTTAAGAGAAAAGATAATTTCTTTCATTTTATACTTCAAAATGCACCTTTCGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGATTTATCTATAATTATTTTCCAAGTTTACAAGAGGAGGACATCATAGGGAAAACGGAGGATAAAATTTTCACCGGAACTGGTGTGAAGGAATTTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAAAGAAATAACTTATGAGACAGAACTATTTGGATCAAAGACATTTTTGATGTATGTAGAACCTGTGTTTAGTAAGGTGGGCGAAACACTTGGAGTAAACTATTTGGGAATGGAAATAATAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTAAGGGAAGAAAATGCAGTTGAAAAAGCCAAGGAAATGGAACTTAATAAAACTATTCACATTACAGAGGAGACAATGAGAGCAAAAAAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTTTCTAGTGTTGTTAGCATGGCTAAAATTCTTACTACTACAAAACTTGATAGGGAGCATAGACAACTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTAAACTTATAAATGATATACTTGATCTTTCCAAGATTGAGTCAGGAGCTATGAAATCGGAAGCTACGAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTGCTTCAGACAGCTGCAACAATATCATTGCAGAAAATGTTAACATTGGAAGGAAATATAGCAAATAATATACCTATTGAGATTCTGACAAATTTAGTCAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTATTCCAGAGCCACCATTTTCAGTTTACAGTGAAAGCTCAATCAACGACGATACTGAGGACGAAACTCGTTCAACCGAAACAACAGTGTGGATACGTTGCGATGTATACGACACAGGAATTGGAATACCAGAAAAGGCTATACCTAATTTATTTAGAAAAGACCATACTCAAAAATATGAAGGCAAAGGTCTAGGACTAGCAATATGTAATCAACTGGTTAAGTCAATGGGGGGTCATTTAACAGTTACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTATCTACAACTTGTGATAATTCTGATGATCAAGATGAGCTTTCGGATGTCGATAACAACGACGATGACACAACCGAGGGATTCTTCCAATTCCCTCCACAAACTTTGGGATCTCTTTTCACATCTAATTGTATATCTAAAAAATAA 1845 0.3659 MWPEDVETDFGKQFSIEKPGMDQDILEEVTILEEPIVADFQRIVEHTNCTNQGSFQLANLMKNWEHKQANAVRLLREELDNLTKQREEVDLRKLEILRFKEESNYSGNKCPVSILDDVVQNKRVEIEAEYDTVVYWKNRAVDLERQMEASIRREVILKEKLQESIETIERQSSPVEELSQILKRKDNFFHFILQNAPFVIGHQDKELRYRFIYNYFPSLQEEDIIGKTEDKIFTGTGVKEFQDFKREVMEKGIPAKKEITYETELFGSKTFLMYVEPVFSKVGETLGVNYLGMEIIDQVRKRERMAKLREENAVEKAKEMELNKTIHITEETMRAKKMLATMSHEIRSPLSSVVSMAKILTTTKLDREHRQLLDVMISSGDLVLKLINDILDLSKIESGAMKSEATKFRPREVVRHVLQTAATISLQKMLTLEGNIANNIPIEILTNLVSNAVKFTHQGKVGINLYVIPEPPFSVYSESSINDDTEDETRSTETTVWIRCDVYDTGIGIPEKAIPNLFRKDHTQKYEGKGLGLAICNQLVKSMGGHLTVTSKEHCGSTFTFILPYKVSTTCDNSDDQDELSDVDNNDDDTTEGFFQFPPQTLGSLFTSNCISKK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00578 614 FunFam Putative histidine kinase 5 322 399 - -
Trre2g00578 614 Gene3D PAS domain 176 311 - -
Trre2g00578 614 PRINTS Bacterial sensor protein C-terminal signature 498 512 IPR004358 GO:0016310|GO:0016772
Trre2g00578 614 PRINTS Bacterial sensor protein C-terminal signature 527 545 IPR004358 GO:0016310|GO:0016772
Trre2g00578 614 PRINTS Bacterial sensor protein C-terminal signature 551 564 IPR004358 GO:0016310|GO:0016772
Trre2g00578 614 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 443 565 IPR003594 -
Trre2g00578 614 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 399 IPR036097 GO:0000155|GO:0007165
Trre2g00578 614 CDD HisKA 333 395 IPR003661 GO:0000155|GO:0007165
Trre2g00578 614 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 388 566 IPR036890 -
Trre2g00578 614 Pfam His Kinase A (phospho-acceptor) domain 337 399 IPR003661 GO:0000155|GO:0007165
Trre2g00578 614 SMART HKATPase_4 437 567 IPR003594 -
Trre2g00578 614 Coils Coil 151 171 - -
Trre2g00578 614 Gene3D - 314 399 - -
Trre2g00578 614 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 134 565 - -
Trre2g00578 614 SMART HisKA_10 334 399 IPR003661 GO:0000155|GO:0007165
Trre2g00578 614 Coils Coil 305 325 - -
Trre2g00578 614 Coils Coil 65 92 - -
Trre2g00578 614 ProSiteProfiles Histidine kinase domain profile. 341 567 IPR005467 -
Trre2g00578 614 Gene3D - 400 572 IPR036890 -
Trre2g00578 614 FunFam Histidine kinase 5 176 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00578 Trre-Chr2 4705793 4714347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00578 1 609 Histidine Kinase Gene Family AT5G10720 61.455 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00578 - - tpra:123916259 1042.72