Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g00565 | ATGAACACACACATGATTGATTCCAACATTCCTACTAGTGGTATCAATGTCACCCCAAATGATCACAACATATCATGTTCCAACAATAAATTATACAAAGGGGTGAGGAAAAGAAAATGGGGGAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGATACACAAGAAAAAGCTGCAAGAGCATTTGATGCAGCTCTTTATTGTCTACGTGGTCGACATGCTAGTTTCAATTTTCCAAACACACCTCTTACCATCAATGTAGCTCTTGGTGTTGATCACAAATCTCTTTCACATCAAGAGATTCAAGAGATTGCTGCAAAGTTTGCCAATGAGTACTCATCACCAATTGAGCTAAGTAGTACTCAAGAAGAAGAAGAAGAAGAAGAAGATCAACAAGTACCATTAGTAAAGTCACAAAATGATGCAAATTCTAGTTCTAATTCTAATTATGATTCCTACTCATTGTGTCCTCTTTATGATAATGAGGGTGATATGAGGAGGATGGATTGGACATTTGAGGATATGTTGGATAATATGAATGGAGGTGCTAATTTTGGCCTCAATTACTATGGGCATGAAAATATGCAATACTCAAGTGAGTTACAATATTCCACACAATCATTTGAGGAACATAATGTGGACCATGAAGATGCTTTTTCAAATCATTCATTTCTTTGGAGTTGGAACTTTTGA | 720 | 0.3625 | MNTHMIDSNIPTSGINVTPNDHNISCSNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHASFNFPNTPLTINVALGVDHKSLSHQEIQEIAAKFANEYSSPIELSSTQEEEEEEEDQQVPLVKSQNDANSSSNSNYDSYSLCPLYDNEGDMRRMDWTFEDMLDNMNGGANFGLNYYGHENMQYSSELQYSTQSFEEHNVDHEDAFSNHSFLWSWNF | 239 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g00565 | 239 | MobiDBLite | consensus disorder prediction | 144 | 158 | - | - | |
Trre2g00565 | 239 | Pfam | AP2 domain | 32 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 26 | 177 | - | - | |
Trre2g00565 | 239 | SMART | rav1_2 | 31 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | FunFam | Ethylene-responsive transcription factor 2 | 30 | 89 | - | - | |
Trre2g00565 | 239 | PRINTS | Ethylene responsive element binding protein signature | 54 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | PRINTS | Ethylene responsive element binding protein signature | 32 | 43 | IPR001471 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | CDD | AP2 | 30 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | ProSiteProfiles | AP2/ERF domain profile. | 31 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | MobiDBLite | consensus disorder prediction | 124 | 158 | - | - | |
Trre2g00565 | 239 | Gene3D | AP2/ERF domain | 31 | 89 | IPR036955 | GO:0003700|GO:0006355 | |
Trre2g00565 | 239 | SUPERFAMILY | DNA-binding domain | 31 | 88 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g00565 | Trre-Chr2 | 4615211 | 4615930 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g00565 | 32 | 190 | AP2-EREBP Transcription Factor Family | AT1G74930 | 49.697 | 1.08e-42 | 142 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Trre2g00565 | AP2 | 3.4e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g00565 | - | - | mtr:25481977 | 278.87 |