Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00565 ATGAACACACACATGATTGATTCCAACATTCCTACTAGTGGTATCAATGTCACCCCAAATGATCACAACATATCATGTTCCAACAATAAATTATACAAAGGGGTGAGGAAAAGAAAATGGGGGAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGATACACAAGAAAAAGCTGCAAGAGCATTTGATGCAGCTCTTTATTGTCTACGTGGTCGACATGCTAGTTTCAATTTTCCAAACACACCTCTTACCATCAATGTAGCTCTTGGTGTTGATCACAAATCTCTTTCACATCAAGAGATTCAAGAGATTGCTGCAAAGTTTGCCAATGAGTACTCATCACCAATTGAGCTAAGTAGTACTCAAGAAGAAGAAGAAGAAGAAGAAGATCAACAAGTACCATTAGTAAAGTCACAAAATGATGCAAATTCTAGTTCTAATTCTAATTATGATTCCTACTCATTGTGTCCTCTTTATGATAATGAGGGTGATATGAGGAGGATGGATTGGACATTTGAGGATATGTTGGATAATATGAATGGAGGTGCTAATTTTGGCCTCAATTACTATGGGCATGAAAATATGCAATACTCAAGTGAGTTACAATATTCCACACAATCATTTGAGGAACATAATGTGGACCATGAAGATGCTTTTTCAAATCATTCATTTCTTTGGAGTTGGAACTTTTGA 720 0.3625 MNTHMIDSNIPTSGINVTPNDHNISCSNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHASFNFPNTPLTINVALGVDHKSLSHQEIQEIAAKFANEYSSPIELSSTQEEEEEEEDQQVPLVKSQNDANSSSNSNYDSYSLCPLYDNEGDMRRMDWTFEDMLDNMNGGANFGLNYYGHENMQYSSELQYSTQSFEEHNVDHEDAFSNHSFLWSWNF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00565 239 MobiDBLite consensus disorder prediction 144 158 - -
Trre2g00565 239 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Trre2g00565 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 177 - -
Trre2g00565 239 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Trre2g00565 239 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Trre2g00565 239 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Trre2g00565 239 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Trre2g00565 239 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Trre2g00565 239 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Trre2g00565 239 MobiDBLite consensus disorder prediction 124 158 - -
Trre2g00565 239 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Trre2g00565 239 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00565 Trre-Chr2 4615211 4615930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00565 32 190 AP2-EREBP Transcription Factor Family AT1G74930 49.697 1.08e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g00565 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00565 - - mtr:25481977 278.87