Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00563 ATGAGAGGATTATTGAACCCCCCAGCCCTGGTGATGTTGATGGTTCAAGTTATCATAGCTTCAGTCAGTGTGCTATACAAAGTGGCTGTTAATGATGGAACGAGCATAAGTGTCCTCACAGCTTATCGTCTCATTTTTGCAGCAGCTATCACTATTCCACTCGCTTTCATTTTTGAAAGGCAGAACAGACCCAAGCTGACTTGTAAAGTGGTTTTCATGGCAAGTTTGTTACTAAACCTATATTTTGAGTCGTTAGCATTAACGTCAGCTACATATGCTTCCGCTATTTTTAATCTCAGTCCCGCCGTCACTTTTATCTTGGCTGTCTCTTTTCGTCTTGAAAGATTGAATTTTGACACGGCGGCGGGCATGGCAAAGGTGTTAGGAACAATAACAGCAGCTGGAGGGGCAATGCTACTGACATTTCTCAAAGGCGTTGAAGTTAAAATTTGGACCTTCCACATTAACCTTTTGCATAAAGAAAAAAGTGGAACACTAAATGGCGACGGTGGTAGCAAATTGCTGGGTATTTTTTTGGGTATTGGAAGCTGCATCAGTTATGCAATGTGGCTCATCATTCAGGCTAAGATGAACAGAGAATACCAAGGACATTATTCCAGCACAGCTTTAATGTGTCTAGCAGGGGCAATTCAAGCAACTGTTTACGCCCTTTGTGTTGAGAAGGATTTGAGCCAATGGAGGTTGTGTTGGAATATTAAACTTCTAACTGCTGCATACACGGGAATTGTGGGTACCGGAATAAATTTTATTCTAATTACATGGTGTGTAGTGATGAGAGGTCCGCTATTCGCCTCTGTTTTCAATCCTCTATTGCTTGTCATTGTGGCAATTGTTGGTTCACTTATGCTTGATGAGAAGTTATATTTAGGAAGTGTAATTGGAGCATCGCTAATAATGATTGGACTGTACGTGATATTATGGGGTAAGAACAAAGAAATGAAAAGTGATTTAGAAATCACTTCAGAGATTGAAGCTGTTGTCACGTCCACACAGTAG 1017 0.409 MRGLLNPPALVMLMVQVIIASVSVLYKVAVNDGTSISVLTAYRLIFAAAITIPLAFIFERQNRPKLTCKVVFMASLLLNLYFESLALTSATYASAIFNLSPAVTFILAVSFRLERLNFDTAAGMAKVLGTITAAGGAMLLTFLKGVEVKIWTFHINLLHKEKSGTLNGDGGSKLLGIFLGIGSCISYAMWLIIQAKMNREYQGHYSSTALMCLAGAIQATVYALCVEKDLSQWRLCWNIKLLTAAYTGIVGTGINFILITWCVVMRGPLFASVFNPLLLVIVAIVGSLMLDEKLYLGSVIGASLIMIGLYVILWGKNKEMKSDLEITSEIEAVVTSTQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00563 338 PANTHER WAT1-RELATED PROTEIN 8 323 IPR030184 GO:0016020|GO:0022857
Trre2g00563 338 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 318 - -
Trre2g00563 338 Pfam EamA-like transporter family 175 313 IPR000620 GO:0016020
Trre2g00563 338 Pfam EamA-like transporter family 9 128 IPR000620 GO:0016020
Trre2g00563 338 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00563 Trre-Chr2 4607780 4609733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00563 12 338 Nodulin-like Gene Family AT1G68170 42.262 4.04e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00563 - - gmx:100809587 394.045