Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00557 ATGACTACTACTAAAAAGATCACATGGAAATCTATGATCTTGATCTTAAATTGTTACAAGAGTAAATACCCTTTGGAGGAATCAAAAAAACAAGTTTTAAAACAAGGTTCTTTCCGAAGACTATGTTTATCTGATATAAGCAATTCAAGTTCAACTCAAGCTATTGAAGATCTTTCAATTTCTTTTGGTGGTTCTAATAAACTTCATGCATTCACACTTGAGGAGCTTAAAGAAGCAACACATAATTTCTCATGGAGTAATATGCTAGGTGAAGGTGGTTTTGGACCTGTTTATAAAGGCTTTGTTGATGAGAAACTTAGACATGGTTTAAAGGCTCAAACTGTAGCTGTTAAATGCTTGGATTTGGATGGTTTGCAAGGTCATAGAGAGTGGCTGGCAGAGATTATATTTCTTGGACAATTAAGTCATCCACATCTTGTGAAGTTAATTGGATATTGTTGTGAAGATGAACATAGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAATCAACTATTCAGAAGATACTCTGCTGCTATGCCATGGTCAACTAGGATGAAAATTGCATTGGGAGCTGCAAAGGGATTGGCTTTCCTTCATGAAGCAGATAAGCCTGTAATATACAGAGATTTCAAAGCATCAAACATCCTACTAGATTCGGATTATACAGCAAAATTATCAGATTTTGGACTAGCTAAGGATGGCCCTGAAGGGGAAGAAACACATGTGACGACACGCGTAATGGGAACACATGGTTATGCCGCTCCTGAGTACATCATGACAGGTCACCTCACAACAAAGAGTGATGTGTATAGCTATGGAGTGGTTCTATTGGAATTGCTTACAGGAAGAAGGGTAGTGGAAAAATCTTCAGAGTCAAATAGAGGGAAGAATTTGGTGGAATGGGCAAGGCCTATGTTGAGAGATCAGAAGAAGCTGCACAGAATCATAGACCGTAGACTTGAAGGACAATTTCCTATGAAAGGAGCATTGAAAGTTGCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCATGTATGAGTGATGTTGTTAAAGTATTGGAACCACTTCAAGATTTTGATGATGTTTTCATAGGACCATTTATCTATGTTGCTGTAAGTGAAAATGGTGATAAAGATCAATATAGCACTCCAAGTAGATAA 1185 0.3764 MTTTKKITWKSMILILNCYKSKYPLEESKKQVLKQGSFRRLCLSDISNSSSTQAIEDLSISFGGSNKLHAFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDEKLRHGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLSHPHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVEKSSESNRGKNLVEWARPMLRDQKKLHRIIDRRLEGQFPMKGALKVAMLAFKCLSHHPNPRPCMSDVVKVLEPLQDFDDVFIGPFIYVAVSENGDKDQYSTPSR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00557 394 PANTHER OS01G0588500 PROTEIN-RELATED 52 365 - -
Trre2g00557 394 Gene3D Phosphorylase Kinase; domain 1 44 165 - -
Trre2g00557 394 Pfam Protein tyrosine and serine/threonine kinase 85 361 IPR001245 GO:0004672|GO:0006468
Trre2g00557 394 CDD STKc_IRAK 89 364 - -
Trre2g00557 394 ProSiteProfiles Protein kinase domain profile. 83 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00557 394 Gene3D Transferase(Phosphotransferase) domain 1 166 371 - -
Trre2g00557 394 FunFam Probable serine/threonine-protein kinase PBL8 166 374 - -
Trre2g00557 394 SUPERFAMILY Protein kinase-like (PK-like) 62 362 IPR011009 -
Trre2g00557 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Trre2g00557 394 FunFam Serine/threonine-protein kinase BIK1 48 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00557 Trre-Chr2 4563947 4566408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00557 16 361 Glycoside Hydrolase AT3G07070 45.833 5.44e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre2g00557 PK_Tyr_Ser-Thr 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00557 - - gmx:100802636 682.559