Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00555 ATGTCTTCTCATGGTAGCAAAAAACTACATACAAACATCGTTATGGTGGCTGTAGACAAAGACAAGAATAGTGGTTATGCCTATCGTTGGACAATTAATAATATTGAAAACCCTATCATCATTGCAGTCCATGTTAAACACAAAGACATTCCTCATCAGGGCACCAATGTTTTCCCCCCTGATGAAGAGGATGTAGACAATGTGTTCAGTCCCTTGCGTGAAATGTGTAATGATAAAGTTGTAAAGATGAAAGAAGCTGTAGTCGATGATAGTGATATTGCTAGAGGAATTTTGGATTATGCAAAGAGAAATCACATTCAAACTATCATCGTTGGTGCACCCTCAAGCTACACCAAAAATGTTCTGTCAAGATCTCTAAACATGAGGACTATAAGCAAAAGGTTCAAAGGGTATGAGGATATAGCAACAACAATAATTAAATCAGCTCCAGATTATAGTTCTGTCTATGTAATTGCAAAAGGAAAGGTAGTGGAAACTCGACCAGCAGTAAGCCCATTGGATAATTTAGATGTAAAATCACCTGGAATGTCAGCTTGTAAATCTGAAAATGATATAAGGGCACCAACATTTAAAAGAGGATCTAGCACTAATAGTAGATCACGAAGAGCACTACTTTTGGTTTCAACTAATCAATCTTTGGAGAGCATTGATTTATCAACTCATCATAGCCAAAAGTCACAATTATTTAGCAAAAACTCAAGCTTAAATGAAAATGAGTCATCTGGTTCACATAAATTTGGTTTATTGGCTTTACCAAAATTAGAGAGGGATTCAAGCATTGAAGCAGATTCTCAACACTTAGGAGATATGGAAGCTGAGATGAAAGAATTGAGACTCAAACTTAGGAAGACTATGAACATGTACAAGTCAGCTTGCAAAGAAGCAATTACTGCCCAAAACAAGGCTAAAGAGATTAATCAATGGAAACTTGAAGAAGCACGTATTGTTGAAGAAGTTATGATGTCAAAAGAAGCAGCATTAGCAATGGCAGAAAAGGAAAAAGCTAAAGCAAAAGCTGCAATTCAAGAAGCTGATGAAGCTATGAAAATGGCAGAAAAAGAAGCACAAAGAAGATTAAAGGCAGAGAGAAAGGCTAGAAGAGAAATGGAAGAGAAAGATCAAGCACTAAATGTGATAGCTCGTAAAGATATTCGATATAGACAATACACCTTAGAAGAAATTGAAAATGCTACTCAAAATTTCTCATTTTCAATGAAAATTGGTGAAGGTGGATATGGACCTGTTTTTAAAGGTCAACTTGATCATACAAATGTTGCTATCAAAGTTTTAAGACCGGATGCTAACCAGGGTAGAAAACAGTTCCTACAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTCCTCCTCCTAGGTGCATGTCAAGAATATGGATGCTTAGTATATGAATACATGGACAATGGTAGCCTAGAAGACAGATTATTAAGAAAACAAAACAGCCCTCCAATTCCATGGCAAAATCGTTTCGAAATAGCTTATGAAATTGCAACAGCACTTCTTTTCCTTCACCAAACAAAGCCAGAAGCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCTTAGACAAAAATTTTGTTTGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTTGTGTAGCAGATTCTGTCACACAATATCATATGACTTCAGCAGCTGGAACATTATCTTACATTGATCCTGAATATCAACAAACAGGAAAATTAACAACAAAATCAGATATTTATTCTTTAGGGATAGTGTTTCTTCAAATGATCACAGCTAAACCTCCAATGGGACTTTCTCATCATGTTAAAAGGGCTATTGATAACGGAAAATTTTTCGATATGCTTGATCCTGTTGTTACTGATTGGCCTATTGATGAAGTTTTGGTATTTGCTAAACTTGCTTTGAGCTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTTATTCCGGAGCTTAATCGATTAAAAGAGTTTGGATGTAAGTCACAAAAATATCAGCAGAATCGGAGTCATGCATTGCGTCCTCCTGCGCTTCCTCGAGGTTCAGTTTGA 2109 0.3637 MSSHGSKKLHTNIVMVAVDKDKNSGYAYRWTINNIENPIIIAVHVKHKDIPHQGTNVFPPDEEDVDNVFSPLREMCNDKVVKMKEAVVDDSDIARGILDYAKRNHIQTIIVGAPSSYTKNVLSRSLNMRTISKRFKGYEDIATTIIKSAPDYSSVYVIAKGKVVETRPAVSPLDNLDVKSPGMSACKSENDIRAPTFKRGSSTNSRSRRALLLVSTNQSLESIDLSTHHSQKSQLFSKNSSLNENESSGSHKFGLLALPKLERDSSIEADSQHLGDMEAEMKELRLKLRKTMNMYKSACKEAITAQNKAKEINQWKLEEARIVEEVMMSKEAALAMAEKEKAKAKAAIQEADEAMKMAEKEAQRRLKAERKARREMEEKDQALNVIARKDIRYRQYTLEEIENATQNFSFSMKIGEGGYGPVFKGQLDHTNVAIKVLRPDANQGRKQFLQEVEVLCNIRHPNMVLLLGACQEYGCLVYEYMDNGSLEDRLLRKQNSPPIPWQNRFEIAYEIATALLFLHQTKPEAIVHRDLKPANILLDKNFVCKISDVGLSRLVPPCVADSVTQYHMTSAAGTLSYIDPEYQQTGKLTTKSDIYSLGIVFLQMITAKPPMGLSHHVKRAIDNGKFFDMLDPVVTDWPIDEVLVFAKLALSCAELSKKDRPDLALEVIPELNRLKEFGCKSQKYQQNRSHALRPPALPRGSV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00555 702 Gene3D Transferase(Phosphotransferase) domain 1 481 693 - -
Trre2g00555 702 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 114 - -
Trre2g00555 702 PANTHER OS02G0152300 PROTEIN 14 684 - -
Trre2g00555 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Trre2g00555 702 Coils Coil 327 379 - -
Trre2g00555 702 SUPERFAMILY Protein kinase-like (PK-like) 390 663 IPR011009 -
Trre2g00555 702 Gene3D HUPs 2 129 IPR014729 -
Trre2g00555 702 Pfam Universal stress protein family 13 115 IPR006016 -
Trre2g00555 702 Pfam Protein kinase domain 410 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00555 702 Gene3D Phosphorylase Kinase; domain 1 385 480 - -
Trre2g00555 702 ProSiteProfiles Protein kinase domain profile. 408 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00555 702 SMART serkin_6 408 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g00555 702 Coils Coil 267 294 - -
Trre2g00555 702 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 381 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00555 Trre-Chr2 4550841 4555118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00555 83 678 Receptor kinase-like Gene Family AT5G12000 55.233 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre2g00555 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00555 - - gmx:100786386 809.675