Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00553 ATGGAAGTATTGTTGTATGTTGTTTCAGTGCCATTAAGAGTAGATAACTTAGTCTGCCATAACTCAATCATAGCTACATACATGGATGTATCCAAATTTAATTCTGTAACTAAGGTTTCCACCGAGACAGTTGTAGGTTCAGACGATTGTCATAATAATTGTGGCAATTTGGATGTTGAAATCGGTATTACAAAAGTCACACCACCGGAATTAGATAAGGAAGGAGAAAGTCCTTTGATGGATATGATATCCGAAAGTAAAAGTGTTTTAGTTGCTGGTGATGTAGGTTTAGCCCCGGAAAGTGAGGAGGATGATTCATTATCATTGGAAGGTGAACAGTTTATTGATAGTTCGTGTTCTCTATCAGTTGTTAGTGAAAACAGTAGTATAGGTGGAGAGGAGTTCATTGCTTCTGATGCTACTTCAGAAGTTGGGACACCATGTTCGATAGACATGGAGAAGAGTATCGGTCCTGTCAATATTGCTGCTCCAGCGGCTGATTTGGGTGAGGTGAATGTTGACACAGATATTATGAGTGAACCCCTTGACGTGGCAGAGAGTCTTGACCAAGAGATTGGAGTTGAATCAGACCTAAAGCCTTCTACAGTTGTTGTTCATCAGCTGCCTCAGGAAGAGGGAACGAGTGTAACAGTTGTCCGGAGTGTTTTTGAATTGGATTATACCCCGTTATGGGGATTCATATCGCTATGTGGAAGAAGACCCGAAATGGAAGACGCAGTTGCAACTGTTCCTCGATTTTTGAACATTCCCATTCAAATGCTAATCGGTGATCGAATACATGACGGAATAAACCGGTCTTTTAGACCACAAATGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGCCGCGAACGCATCCATTTGGCCTTGGCTGAGGAAATAGAATTTGTCAAGGAAGGTCTAAGCAATGGTAGTATCAAGGATAGTTGCCAAGATCAATGGAAAAAAGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAATTGGCGGAACAACTAATAATGAAGCTATTGCGCCAGAAACTGTCGGCTCTACATCTGTTGTTGCTCTTATATGTTCATCTCACATTATAGTTGCGAACTGTGGCGATTCAAGAGCTGTTCTTTGTCGTGGCAAAGAACCAATGGCGTTATCAGTGGACCACAAACCAAACAGAGAAGATGAATATGCAAGAATTGAAGCAGCCGGAGGAAAGGTGATACAATGGAATGGTCATCGTGTCTTTGGTGTTCTAGCAATGTCAAGGTCTATCGGTGACAGATATTTGAAACCATGGATTATTCCGGATCCAGAAGTTCAATTCATTCCTCGTGCAAAAGAGGATGAATGTCTCATTTTGGCCAGTGATGGTCTGTGGGATGTGATGACCAACGAAGAGGTGTGTGACCTGGCTCGAAAACGTATACTTCTTTGGTACAAGAAAAATGGCGTAGAATTACCCTCAGAAAGGGGAGAGGGAAGTGATCCGGCTGCACAAGCAGCAGCGGAGTTCCTATCGAATCGCGCTCTTCAGAAAGGAAGCAAAGACAACATCACCGTGATTGTTGTGGATTTAAAACCTCAACGAAAGTACAAGAACAAGACATGA 1635 0.4226 MEVLLYVVSVPLRVDNLVCHNSIIATYMDVSKFNSVTKVSTETVVGSDDCHNNCGNLDVEIGITKVTPPELDKEGESPLMDMISESKSVLVAGDVGLAPESEEDDSLSLEGEQFIDSSCSLSVVSENSSIGGEEFIASDATSEVGTPCSIDMEKSIGPVNIAAPAADLGEVNVDTDIMSEPLDVAESLDQEIGVESDLKPSTVVVHQLPQEEGTSVTVVRSVFELDYTPLWGFISLCGRRPEMEDAVATVPRFLNIPIQMLIGDRIHDGINRSFRPQMTHFFGVYDGHGGSQVANYCRERIHLALAEEIEFVKEGLSNGSIKDSCQDQWKKAFTNCFLKVDAEIGGTTNNEAIAPETVGSTSVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVQFIPRAKEDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNGVELPSERGEGSDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKNKT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00553 544 FunFam Protein phosphatase 2C 16 218 544 - -
Trre2g00553 544 SUPERFAMILY PP2C-like 216 536 IPR036457 -
Trre2g00553 544 PANTHER PROTEIN PHOSPHATASE 183 534 IPR015655 GO:0004722|GO:0006470
Trre2g00553 544 ProSitePatterns PPM-type phosphatase domain signature. 281 289 IPR000222 GO:0043169
Trre2g00553 544 ProSiteProfiles PPM-type phosphatase domain profile. 230 534 IPR001932 -
Trre2g00553 544 Pfam Protein phosphatase 2C 276 527 IPR001932 -
Trre2g00553 544 CDD PP2Cc 235 534 IPR001932 -
Trre2g00553 544 Gene3D - 217 544 IPR036457 -
Trre2g00553 544 SMART PP2C_4 216 532 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00553 Trre-Chr2 4532094 4534849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00553 1 544 PP2C-type Phosphatase Gene Family AT1G17550 48.288 7.20e-165 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00553 K14497 - gmx:100805281 816.994