Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00551 ATGACAGAGAGAAATCCAATAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAATGGTGTTTGGAACTCTCTGACTACATGAATTTAGATGATCACAACCAATGGTTCCAAATTGATCCTACAACTGATCAGTCTTTTGTTTATCAAGCTAATGAAGCAGGAGATACTACCACTACTATGAGTGTTAAAGAGAGAGTTGCATTCAAAACAAAGTCAGAGATTGAAGTACTTGATGATGGTTATAGATGGAGGAAATATGGAAAGAAAATGGTCAAGAACAGCCCCAATCCAAGGAACTATTATAGGTGTTCAGTGGACGGGTGTCCTGTAAAAAAGAGAGTTGAAAGAGATAAAGATGATCCAAAGTATGTGATAACAACCTATGAAGGCATGCACACCCACCCAAATTCTTGCTAG 426 0.3826 MTERNPIAANSSSPDSDFSNQWCLELSDYMNLDDHNQWFQIDPTTDQSFVYQANEAGDTTTTMSVKERVAFKTKSEIEVLDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDKDDPKYVITTYEGMHTHPNSC 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00551 141 FunFam WRKY transcription factor 57 66 140 - -
Trre2g00551 141 SUPERFAMILY WRKY DNA-binding domain 73 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00551 141 ProSiteProfiles WRKY domain profile. 75 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00551 141 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 138 IPR044810 GO:0003700
Trre2g00551 141 Gene3D WRKY domain 67 133 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00551 141 Pfam WRKY DNA -binding domain 81 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00551 141 SMART WRKY_cls 80 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00551 Trre-Chr2 4521055 4521848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00551 68 137 WRKY Transcription Factor Family AT5G26170 84.286 1.94e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g00551 WRKY 7.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00551 - - gmx:100819462 177.948