Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00550 ATGACAGAGAGAAATCCAATAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAATGGTGTTTGGAACTCTCTGACTACATGAATTTAGATGATCACAACCAATGGTTCCAAATTGATCCTACAACTGATCAGTCTTTTGTTTATCAAGCTAATGAAGCAGGTGGCAGTCACATTAATGAAGGGTCTTCTAGTTCTACCAGAGATACTACCACTACTATGAGTGTTAAAGAGAGAGTTGCATTCAAAACAAAGTCAGAGATTGAAGTACTTGATGATGGTTATAGATGGAGGAAATATGGAAAGAAAATGGTCAAGAACAGCCCCAATCCAAGGAACTATTATAGGTGTTCAGTGGACGGGTGTCCTGTAAAAAAGAGAGTTGAAAGAGATAAAGATGATCCAAAGTATGTGATAACAACCTATGAAGGCATGCACACCCACCCAAATTCTTGCTAG 465 0.3871 MTERNPIAANSSSPDSDFSNQWCLELSDYMNLDDHNQWFQIDPTTDQSFVYQANEAGGSHINEGSSSSTRDTTTTMSVKERVAFKTKSEIEVLDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDKDDPKYVITTYEGMHTHPNSC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00550 154 ProSiteProfiles WRKY domain profile. 88 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00550 154 MobiDBLite consensus disorder prediction 57 76 - -
Trre2g00550 154 Gene3D WRKY domain 80 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00550 154 FunFam WRKY transcription factor 57 79 153 - -
Trre2g00550 154 Pfam WRKY DNA -binding domain 94 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g00550 154 SUPERFAMILY WRKY DNA-binding domain 86 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g00550 154 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 151 IPR044810 GO:0003700
Trre2g00550 154 SMART WRKY_cls 93 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00550 Trre-Chr2 4521055 4521848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00550 28 150 WRKY Transcription Factor Family AT5G26170 49.664 7.28e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g00550 WRKY 8.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00550 - - gmx:100819462 186.808