Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00544 ATGGACGGAGTTGATGTTCCTTACAATCCTCGTACTGTCGAAGAAGTCTTTCGTGATTTTAAGGGTCGCAGAGCTGCCTTAATCAAAGCCCTCACCATTGATGTCGAAGAATTCTACCAGCAGTGTGATCCCGAGAAGGAAAACCTTTGCCTTTATGGATTTCCGAGTGAGCAGTGGGAGGTCAATCTGCCAGCTGAGGAAGTGCCGCCTGAGCTTCCAGAGCCTGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTCTCTTTGGTTGCTGTACACAGCGATGCTTGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTCGACAAAGCTGACAGGAAGCGACTATTTAATATGATAAATGATCTACCAACAATCTTTGAGGCTGTTACAGGGTTGGCTAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAACAATAGCAGTACCAAATCCAAATCAAACTCCAAGCGAGGTTCTGAAGCTCAGCCAAAGTATTCAAAACCAATGGCAATGCAAATGCAATCAAATGAAGATGATGAGGATGGTCTCGGTGTGGACGAGGAAGATGATGAGGAAGAACATGGAGATGCATCGTGTGGGGCATGTGGAGAAAGCTATGCAACTGATGAGTTTTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCATGGAAAATGCGTGAAGATTACTCCAGCAAGGGCTGAGCATATCAAACAATACAAATGTCCAGCTTGCAGCAAGAGAGCTCGCACTTGA 783 0.4444 MDGVDVPYNPRTVEEVFRDFKGRRAALIKALTIDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEAVTGLAKKQGKEKSSVSNNSSTKSKSNSKRGSEAQPKYSKPMAMQMQSNEDDEDGLGVDEEDDEEEHGDASCGACGESYATDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSKRART 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00544 260 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Trre2g00544 260 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Trre2g00544 260 CDD PHD_AL_plant 208 257 IPR044104 -
Trre2g00544 260 PANTHER CPG BINDING PROTEIN 9 259 IPR045104 GO:0006355|GO:0042393
Trre2g00544 260 Pfam PHD-finger 208 256 IPR019787 -
Trre2g00544 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 256 IPR013083 -
Trre2g00544 260 MobiDBLite consensus disorder prediction 146 205 - -
Trre2g00544 260 MobiDBLite consensus disorder prediction 146 170 - -
Trre2g00544 260 FunFam PHD finger alfin-like protein 199 256 - -
Trre2g00544 260 SUPERFAMILY FYVE/PHD zinc finger 196 257 IPR011011 -
Trre2g00544 260 SMART PHD_3 207 255 IPR001965 -
Trre2g00544 260 MobiDBLite consensus disorder prediction 188 204 - -
Trre2g00544 260 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00544 Trre-Chr2 4493783 4496701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00544 1 259 Alfin-like Transcription Factor Family AT3G42790 70.498 5.37e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre2g00544 Alfin 1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00544 K26274 - vvi:100247536 429.483