Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00539 ATGGGGTGGGGTCACCTTCGAAGACATGGTTCAGATTCCGGTAACAACGCCGATGCAGGTCCGAGCACCAGTACGCCGGTACCACGCCACTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCTTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATGTTCTTACAACAGGCTCTGGACAACAAACACTTGGTGAGGAATACTGTGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCGACACCGGCCAGGCGCGCTTTGTTCATTGTATACCAGTCGGCGATTCCATACATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGGGGCATTATCCTTGCTGACTACGAGTCTGCTGAGAGTTATTACGGTGAAAATGCTCGCGGAAGTAGTAGTTCTCGGGTTTATGCCGTGGGTGAACTTTTTCCTTCGTCTACCTCAGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAACTCGGTGGATTTTGGTTGCATATGATTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTTTACTTCGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATAGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTGACATCACTTGCTGGTTCAGTTCATCAAGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCAAGAAGCTGACAATGGAAGTTGGGTCTCTGGCACTTCATCTTCTGAGCAGCATGCATCTAGTGGGGTTAGCAAATGCACGCTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTGGTTTGTATTTATCATTCAGACTTCTAG 1197 0.467 MGWGHLRRHGSDSGNNADAGPSTSTPVPRHFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAESYYGENARGSSSSRVYAVGELFPSSTSGQSTSTLTRLKEKLGGFWLHMIQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNLTSLAGSVHQASFATDHTSAGHGLPVLNEEGNLASQEADNGSWVSGTSSSEQHASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00539 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 395 IPR013083 -
Trre2g00539 398 MobiDBLite consensus disorder prediction 1 33 - -
Trre2g00539 398 CDD RING-HC_PEX10 342 393 - -
Trre2g00539 398 Pfam Zinc finger, C3HC4 type (RING finger) 343 387 - -
Trre2g00539 398 FunFam Peroxisome biogenesis factor 10 319 395 - -
Trre2g00539 398 Pfam Pex2 / Pex12 amino terminal region 46 281 IPR006845 -
Trre2g00539 398 SUPERFAMILY RING/U-box 343 387 - -
Trre2g00539 398 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 396 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Trre2g00539 398 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Trre2g00539 398 ProSiteProfiles Zinc finger RING-type profile. 344 382 IPR001841 -
Trre2g00539 398 SMART ring_2 344 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00539 Trre-Chr2 4428337 4434948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00539 338 394 C3H Transcription Factor Family AT4G28270 34.247 2.36e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00539 K13346 - gmx:100783914 677.167