Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00516 ATGGCTTTAATAGGTGGATTATTGGGTTATTTGTATAGGCCATTTTGGAGATTAAGGAAAGTTCCAGGCCCACCTTCTCTTCCTCTTGTAGGACATCTTCCATTACTAGCAAAGTATGGCCCGGATGTGTTCTCAATTCTTGCCAAGCAATATGGCCCAATTTACAGATTTCATATGGGAAGACAGCCTCTAATAATCATAGCAGATGCAGAGCTTTGTAAAGAGGTGGGAATAAGAAAATTCAAAGATATTCCAAATAGAAGCATTCCTTCTCCTATCTCTGCTTCTCCTCTTCACCAAAAAGGTTTATTCTTCACAAGGGACTCGCAATGGTCTACGATGAGAAATACCATACTATCAGTATACCAACCATCACACTTAGCAAACTTAGTGCCAAAAATGCAATCATTTATAGAATCAGCAACACAAAATCTTGATGACACCTCAAAAGAAGACATAATCTTTTCCAATCTTTCCCTAAGATTAGCAACAGATGTTATTGGAGATGCAGCATTTGGTGTCAACTTTGGTCTCTCAAATCCTCATTCAATTTGTGAATCAATGAAAAGTGTTAACAATGTAGAACATTCAAGTACTAGTAGTGATGAAGTATCAAATTTCATCAATCAACATATTTACTCCACAACACAACTTAAGATGGATTTGTCTGGTTCATTCTCAATTATAATTGGTTTAATTGCTCCTATACTTCAAGAACCATTTAGACAAATTTTGAAAAGAATAAAGGGCACTATGGATTGGAAAATGGAATGTACTAATAAAAATTTAACCGGTCGTCTTGATGAGATTGTTAAGAAGAGAATGGAAGATAAGAATCGAACTTCAAAGAACTTCTTGTCGCTTATATTAAATGCAAGAGAATCAAAGAGTGTGTCAGAGAGTGTGTTTTCATTTGACTACATAAGTGCTATAACTTATGAACACTTACTTGCCGGCTCGGCTACAACATCCTTTACATTGTCATCTATTGTCTATTTGGTTGCTGGTCACCTAAATGTTGAGAAAAAATTGCTTCAAGAGATTGATGGTTTTGGAACACATGATAGGATACCTAATGCTAAAGATCTTAATGAAAGTTTTCCTTATCTTGATCAGGTAATTAAAGAGGCAATGCGGATTTACACTGTCTCTCCATTGGTTGCAAGAGAAACATCAAGTGAAGTAGAGATAGGAGGTTACCTTCTTCCCAAGGGAACATGGGTATGGTTAGCACTTGGAGTTCTAGCAAAAGATTCAAGAAACTTTGCAGAGCCAGAAAAATTCAAACCAGAGAGGTTTGATCCTAAATGTGAAGAAATGAAAAGAAGGCACCCTTATGCATTCATACCATTTGGAATTGGTCCAAGAGCATGTATTGGCCAGAAATTTTCCATGCAAGAAATCAAGCTTACTTTGATTCATTTATATAGAAAATATGTATTTCGTCATTCACTTAATATGGAAAAACCTCTAGAACTTGAATATGGTATGGTTCTCAACTTCAAGCATGGTGTCAAGCTTAGAGTTATAAAAAGAACATAA 1542 0.3573 MALIGGLLGYLYRPFWRLRKVPGPPSLPLVGHLPLLAKYGPDVFSILAKQYGPIYRFHMGRQPLIIIADAELCKEVGIRKFKDIPNRSIPSPISASPLHQKGLFFTRDSQWSTMRNTILSVYQPSHLANLVPKMQSFIESATQNLDDTSKEDIIFSNLSLRLATDVIGDAAFGVNFGLSNPHSICESMKSVNNVEHSSTSSDEVSNFINQHIYSTTQLKMDLSGSFSIIIGLIAPILQEPFRQILKRIKGTMDWKMECTNKNLTGRLDEIVKKRMEDKNRTSKNFLSLILNARESKSVSESVFSFDYISAITYEHLLAGSATTSFTLSSIVYLVAGHLNVEKKLLQEIDGFGTHDRIPNAKDLNESFPYLDQVIKEAMRIYTVSPLVARETSSEVEIGGYLLPKGTWVWLALGVLAKDSRNFAEPEKFKPERFDPKCEEMKRRHPYAFIPFGIGPRACIGQKFSMQEIKLTLIHLYRKYVFRHSLNMEKPLELEYGMVLNFKHGVKLRVIKRT 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00516 513 PANTHER THROMBOXANE-A SYNTHASE 5 512 - -
Trre2g00516 513 Gene3D Cytochrome P450 11 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Trre2g00516 513 Pfam Cytochrome P450 22 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 FunFam Cytochrome P450 3A4 8 513 - -
Trre2g00516 513 SUPERFAMILY Cytochrome P450 13 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 162 180 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 48 67 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g00516 513 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00516 Trre-Chr2 4191961 4195114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00516 59 512 Cytochrome P450 AT2G26170 72.026 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00516 K20771 - gmx:100805689 885.945