Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g00510 ATGGTCAAAACCAAACAAGGAACCTACGAACAAAAACAGAACAAAGTCGTAGTTCTATGGGACCTCGACAATAAACCACCACGTGGACCACCCTACAACGCCGCACTCTCTCTCAAAACCCTCGCCGAAACTTTCGGCCAACTCACCGACATCTCCGCTTACGCTAACCGTCATACCTTCATTCATCTCCCTCAATGGGTCCTCAACCAACGCCGAGAACGCAAAAACCTCGATTTCCTCGAACGCAAAGGTATCATTAATCCCTCCGAACCTTACTTATGTTCTGTTTGCGGTCGTAAATGTAAAACAAACGTAGATCTTAAGAAACATTTTAAGCAACTTCATCAAAGAGAGAGACAGAAAAAGGTAAATCGTATGAATTCGTTGAAAGGGAAGAAGAGACAGAAGTATAAGGAAAGATTTGTTAGTGGTGATTCCAAGTATAATGACGCGGTTCGAGGGATTTTAAAGCCGAAAGTTGGTTATGGTTTAGCGTCTGAATTGCGGCGTGCTGGTGTTTTTGTTAAGACTGTTGAGGATAAACCTCAGGCTGCTGATTGGGCTTTGAAGAAAAGGATGATGTATTCTTTGGATAGAGGGGTTGATTGGTTGTTTTTGGTTTCCGATGATTCGGATTTTAGTGAGATGTTGAGGAGGGCTAAGGAGGCGAATTTAGGGACCGTTGTTGTTGGGGATGTTGATAGAGCTTTAGGGAGACATGCTGATTTGTGGGTTTCTTGGAATGATGTTGAGAATGGCGAGGTTACAGAAAAGGATTTGGTTCCGAGGAGTAGAGACAGGAGGAGAAGAACTACAAATGCATCGACGACAACGACAATGGACGAGTTTGGTGATGTTTTGTTTTTCCATGACGCTAGGCTTGACACCAATTTGAGGTTTAAGAATCAATTGCTACCCAAATTGAAGTCGAGTGATATTGAAAGCTATGTAGCTCTGACACTGTTCCCACAAAGTGAAAAATTCATCGAGTGTGTTATTGCATCCTTAATGAACCCAAATCACGTGCAATCTGGTTTTTCATGA 1044 0.4272 MVKTKQGTYEQKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAETFGQLTDISAYANRHTFIHLPQWVLNQRRERKNLDFLERKGIINPSEPYLCSVCGRKCKTNVDLKKHFKQLHQRERQKKVNRMNSLKGKKRQKYKERFVSGDSKYNDAVRGILKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKRMMYSLDRGVDWLFLVSDDSDFSEMLRRAKEANLGTVVVGDVDRALGRHADLWVSWNDVENGEVTEKDLVPRSRDRRRRTTNASTTTTMDEFGDVLFFHDARLDTNLRFKNQLLPKLKSSDIESYVALTLFPQSEKFIECVIASLMNPNHVQSGFS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g00510 347 CDD PIN_LabA-like 102 232 - -
Trre2g00510 347 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Trre2g00510 347 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 5 283 - -
Trre2g00510 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Trre2g00510 347 Gene3D - 6 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g00510 Trre-Chr2 4126210 4128171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g00510 1 267 C2H2 Transcription Factor Family AT5G52010 70.787 1.38e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g00510 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g00510 - - pavi:110762010 441.425